| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
Click here to switch to the map view.
The map label for this gene is thrS [H]
Identifier: 213692035
GI number: 213692035
Start: 1334838
End: 1336871
Strand: Direct
Name: thrS [H]
Synonym: Blon_1153
Alternate gene names: 213692035
Gene position: 1334838-1336871 (Clockwise)
Preceding gene: 213692033
Following gene: 213692036
Centisome position: 47.12
GC content: 62.24
Gene sequence:
>2034_bases ATGGCGCAAGCTACCATCTCCATAACCGTCAACGGCGAAGCGAAGGAGGTGGAAGCAACCACCACCGGCGTAGAACTGTT CGCGGAAGACAAGAACATCATCGCGGTCAAGATCAACGGCGAAAACCGTGACCTGTACACGCCGCTTGCCGACGGCGACA CCGTAGAGCCCATCACGCTCGATTCCGAAGACGGCCTCGCGATCATGCGTCACTCAGCCACCCACGTCATGGCCCAGGCC GTGCAGGAGGTCTATCCGAACGCCAAGCTCGGCGTCGGCCCGGTGATCAAGGACGGCTTCTACTACGATTTCCAGGTTGA CAAGCCCTTCACCCCGGAAGACCTCAAGGACATCGAGAAGCGCATACAGCGCATCATCAAGTCCTCCCAGTCCTTCCGCC GCCGGTCCGTGACCGAGGAAGAGGCCCTGAAGGAAGAGGCCGACCAGCCCTTCAAGATCGAGCTGATCGAAGACAAGGAA GCACACCTCGACCCGGCCGCCGCCACCGAGATTTCCGAGAAGGAACTCAGCTTCTACGACAACGTCGACCGTGACGGCAA TGTGGTCTGGAAGGACCTGTGCCGCGGCCCGCACCTACCGAACACCCGCTACATCAAGGCTTTCAAGATTGAGCGTTCAG CCGCTGCCTACTGGCGTGGCAGCGAGAAGAACCCGACCATGCAGCGCATCTACGGCACCGCATGGGCCACCAAGGACGAT CTCAAGGCATACCAGACCCGTCTGGAGGAGGCCGCCAAGCGCGACCACCGCAAGCTCGGTGCCGAGATGGATCTGTTCTC CTTCCCGGACGAGATCGGCCCCGGCCTGGCCGTGTTCCACCCGAAGGGTGCCGCCGTGATCAACGCGATGGAGGACTACT CGCGCGAGATGCACCGCAAGCACCACTACAGCTTCGTGCAGACCCCGCACATCACCAAGGGCGGCCTGTACGAGACCTCC GGTCACCTGCACTGGTACAAGGATGGCATGTACCCGGCCATGCACCTCGACGAGGAGTACGACGCGGACGGCAACGTGAC CAAGCCCGGCTTCGACTACTACCTCAAGCCGATGAACTGCCCGATGCACAACCTGATCTTCAAGTCGCGCCAGCGCTCCT ACCGTGAGCTGCCGCTGCGCCTCTTCGAGTTCGGTACCGTGTACCGCTACGAGAAGTCCGGCGAGGTCCATGGCCTGACC CGTGTGCGTGGCTTGACTCAGGACGATTCCCACATCTACTGCACCCGCGAGCAGATGAAGGACGAGCTGACCAGCCTGCT GACCTTCGTGCTGAATCTGCTCAAGGACTTCGGTCTGTCCGACTTCTACTTGGAGCTCTCCACCAAGGATCCGGACAAGT ACGTCGGCTCCGACGAGATCTGGGAGGAGGCCACCCGTACCCTGCGTGAGGTCGCCGAGGCATCCCACCTCGACCTCGTG GCCGATCCGGGCGGGGCCGCCTTCTACGGCCCGAAGATCTCCGTGCAGGCCCGTGACGCCATCGGCCGTACTTGGCAGGT CTCGACCATCCAGCTCGACTTCAACCTGCCCGAGCGTTTCCAGCTTGAGTACATCGCGAAGGACGGCACCCATCAGCGTC CGGTGATGATTCACCGCGCCCTGTTCGGCTCCATCGAACGCTTCTTCGCCGTGCTGCTCGAGCACTACGCTGGCGCCTTC CCGGCGTGGCTGGCCCCCGTGCAGGTGCTCGGCGTGCCGGTTGCCGACGAGTTCGCCCCGCATCTGGCCGGTTTCGTCAA GTCCCTCGAGGATGAGATGGTCCGTTGCGAGATCGACTACTCCGATGACCGCTTCGGCAAGAAGATTCGCAACGCCTCCA AGTCCAAGGTGCCGTTCATCCTCATCGTCGGTGAGGAAGACATGAACAACAACGCGGTGAGCTTCCGCTTCCGCGACGGC AGCCAGCTCAACGGCGTACCGGTGGACAAGGCTCGCGAGCAGATCCTCGCCGTGATCGCCAAGCGCGTCCAGGTGAACTC CGCCGACGACTTCAACGCCGCTGTAGCTGAGTAA
Upstream 100 bases:
>100_bases GGTGGTATTTGTCGTACGCCCAACCTATCGTGTCCTACGTTGATTAACCAGTCCAGGCCTGCACATTAGTACCGCGGGCC CCGATAGCAAAGGACAGATC
Downstream 100 bases:
>100_bases AGGAATACATGATGGCTGACGTGCGTGTCGATGATCCGGCGGACTTCCCGCCTCAGGAAGACACGGTCGAACGACTGTGG ACCCCGCAGCGCATGACCTA
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 677; Mature: 676
Protein sequence:
>677_residues MAQATISITVNGEAKEVEATTTGVELFAEDKNIIAVKINGENRDLYTPLADGDTVEPITLDSEDGLAIMRHSATHVMAQA VQEVYPNAKLGVGPVIKDGFYYDFQVDKPFTPEDLKDIEKRIQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKE AHLDPAAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKIERSAAAYWRGSEKNPTMQRIYGTAWATKDD LKAYQTRLEEAAKRDHRKLGAEMDLFSFPDEIGPGLAVFHPKGAAVINAMEDYSREMHRKHHYSFVQTPHITKGGLYETS GHLHWYKDGMYPAMHLDEEYDADGNVTKPGFDYYLKPMNCPMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLT RVRGLTQDDSHIYCTREQMKDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDLV ADPGGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFQLEYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAF PAWLAPVQVLGVPVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGEEDMNNNAVSFRFRDG SQLNGVPVDKAREQILAVIAKRVQVNSADDFNAAVAE
Sequences:
>Translated_677_residues MAQATISITVNGEAKEVEATTTGVELFAEDKNIIAVKINGENRDLYTPLADGDTVEPITLDSEDGLAIMRHSATHVMAQA VQEVYPNAKLGVGPVIKDGFYYDFQVDKPFTPEDLKDIEKRIQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKE AHLDPAAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKIERSAAAYWRGSEKNPTMQRIYGTAWATKDD LKAYQTRLEEAAKRDHRKLGAEMDLFSFPDEIGPGLAVFHPKGAAVINAMEDYSREMHRKHHYSFVQTPHITKGGLYETS GHLHWYKDGMYPAMHLDEEYDADGNVTKPGFDYYLKPMNCPMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLT RVRGLTQDDSHIYCTREQMKDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDLV ADPGGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFQLEYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAF PAWLAPVQVLGVPVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGEEDMNNNAVSFRFRDG SQLNGVPVDKAREQILAVIAKRVQVNSADDFNAAVAE >Mature_676_residues AQATISITVNGEAKEVEATTTGVELFAEDKNIIAVKINGENRDLYTPLADGDTVEPITLDSEDGLAIMRHSATHVMAQAV QEVYPNAKLGVGPVIKDGFYYDFQVDKPFTPEDLKDIEKRIQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEA HLDPAAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKIERSAAAYWRGSEKNPTMQRIYGTAWATKDDL KAYQTRLEEAAKRDHRKLGAEMDLFSFPDEIGPGLAVFHPKGAAVINAMEDYSREMHRKHHYSFVQTPHITKGGLYETSG HLHWYKDGMYPAMHLDEEYDADGNVTKPGFDYYLKPMNCPMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTR VRGLTQDDSHIYCTREQMKDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDLVA DPGGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFQLEYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFP AWLAPVQVLGVPVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGEEDMNNNAVSFRFRDGS QLNGVPVDKAREQILAVIAKRVQVNSADDFNAAVAE
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38570111, Length=668, Percent_Identity=37.2754491017964, Blast_Score=424, Evalue=1e-118, Organism=Homo sapiens, GI38202255, Length=614, Percent_Identity=38.9250814332248, Blast_Score=415, Evalue=1e-116, Organism=Homo sapiens, GI20070344, Length=680, Percent_Identity=35.1470588235294, Blast_Score=369, Evalue=1e-102, Organism=Escherichia coli, GI1788013, Length=634, Percent_Identity=37.5394321766561, Blast_Score=480, Evalue=1e-136, Organism=Caenorhabditis elegans, GI71984184, Length=622, Percent_Identity=36.4951768488746, Blast_Score=399, Evalue=1e-111, Organism=Caenorhabditis elegans, GI71984192, Length=622, Percent_Identity=36.4951768488746, Blast_Score=399, Evalue=1e-111, Organism=Saccharomyces cerevisiae, GI6322112, Length=643, Percent_Identity=37.9471228615863, Blast_Score=413, Evalue=1e-116, Organism=Saccharomyces cerevisiae, GI6322654, Length=453, Percent_Identity=34.6578366445916, Blast_Score=261, Evalue=2e-70, Organism=Drosophila melanogaster, GI24583842, Length=610, Percent_Identity=38.1967213114754, Blast_Score=425, Evalue=1e-119, Organism=Drosophila melanogaster, GI28574141, Length=610, Percent_Identity=38.1967213114754, Blast_Score=425, Evalue=1e-119, Organism=Drosophila melanogaster, GI24583839, Length=610, Percent_Identity=38.1967213114754, Blast_Score=425, Evalue=1e-119,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 76820; Mature: 76689
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQATISITVNGEAKEVEATTTGVELFAEDKNIIAVKINGENRDLYTPLADGDTVEPITL CCCEEEEEEECCCCCEEEEECCCEEEEECCCCEEEEEECCCCCEEECCCCCCCCCCEEEE DSEDGLAIMRHSATHVMAQAVQEVYPNAKLGVGPVIKDGFYYDFQVDKPFTPEDLKDIEK CCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHH RIQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDPAAATEISEKELSFYD HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCHHHHHHHC NVDRDGNVVWKDLCRGPHLPNTRYIKAFKIERSAAAYWRGSEKNPTMQRIYGTAWATKDD CCCCCCCCHHHHHHCCCCCCCCCEEEEEEEECHHHHHCCCCCCCCHHHHHHHHHCCCHHH LKAYQTRLEEAAKRDHRKLGAEMDLFSFPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK HHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMHLDEEYDADGNVTKPGFDYYLKPMNC HCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCEEECCCCC PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK CHHHHHHHHHHHHHHHCCHHHHHCCCEEEECCCCCCCCHHHHCCCCCCCCEEEEEHHHHH DELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDLV HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHCCCEEE ADPGGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFQLEYIAKDGTHQRPVMIHRA ECCCCCEEECCEEEEEEHHCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHH LFGSIERFFAVLLEHYAGAFPAWLAPVQVLGVPVADEFAPHLAGFVKSLEDEMVRCEIDY HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEEECC SDDRFGKKIRNASKSKVPFILIVGEEDMNNNAVSFRFRDGSQLNGVPVDKAREQILAVIA CCHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH KRVQVNSADDFNAAVAE HHHCCCCCCCCCHHCCC >Mature Secondary Structure AQATISITVNGEAKEVEATTTGVELFAEDKNIIAVKINGENRDLYTPLADGDTVEPITL CCEEEEEEECCCCCEEEEECCCEEEEECCCCEEEEEECCCCCEEECCCCCCCCCCEEEE DSEDGLAIMRHSATHVMAQAVQEVYPNAKLGVGPVIKDGFYYDFQVDKPFTPEDLKDIEK CCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHH RIQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDPAAATEISEKELSFYD HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCHHHHHHHC NVDRDGNVVWKDLCRGPHLPNTRYIKAFKIERSAAAYWRGSEKNPTMQRIYGTAWATKDD CCCCCCCCHHHHHHCCCCCCCCCEEEEEEEECHHHHHCCCCCCCCHHHHHHHHHCCCHHH LKAYQTRLEEAAKRDHRKLGAEMDLFSFPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK HHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMHLDEEYDADGNVTKPGFDYYLKPMNC HCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCEEECCCCC PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK CHHHHHHHHHHHHHHHCCHHHHHCCCEEEECCCCCCCCHHHHCCCCCCCCEEEEEHHHHH DELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDLV HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHCCCEEE ADPGGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFQLEYIAKDGTHQRPVMIHRA ECCCCCEEECCEEEEEEHHCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHH LFGSIERFFAVLLEHYAGAFPAWLAPVQVLGVPVADEFAPHLAGFVKSLEDEMVRCEIDY HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEEECC SDDRFGKKIRNASKSKVPFILIVGEEDMNNNAVSFRFRDGSQLNGVPVDKAREQILAVIA CCHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH KRVQVNSADDFNAAVAE HHHCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA