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The map label for this gene is xerD [H]

Identifier: 213692031

GI number: 213692031

Start: 1329849

End: 1331024

Strand: Direct

Name: xerD [H]

Synonym: Blon_1149

Alternate gene names: 213692031

Gene position: 1329849-1331024 (Clockwise)

Preceding gene: 213692030

Following gene: 213692033

Centisome position: 46.95

GC content: 62.93

Gene sequence:

>1176_bases
ATGGCGAACGTCACCAGATACAAAACCTCAAAGGGCGAAAACCGCTACCGCGTCCGCTACCGGAAACCCGACGGTACGCA
AACCGACAAGAGGGGTTTCCGCCGCAAGATCGACGCGGAGAACTGGGCGGCCGAGCACGTCACCATCGCCAAGGCCACCA
ACAGCTATGTTGACCCGGAGGACGGCAAACGACGTGTTGGAGACCTCTACGAGCAATGGCTGAAGGAGAAATGGCCGTTT
TGGAAGGAAACCACACGGGTCAACGCCACGGAAGCATGGCGACTCTACTGCGAGGAGCGTTGGGCCGATCGTCGGATCGG
CACCATCACCCGCGCCGAGGTCCAGGCGTGGATCAGCGACATCATCGCGAGCGCCGGCGCTCCATCCGTGAGACGCCCGT
ACCAGACCATGCTCGGCATCTGCCGCATGGCCGTCCGGGACAAGCTCATACTCGACAACCCCTGTGAAAACGTTGAACTC
CCCAAGCTGCCGAGGCGCAAGAGCCGTCGCGTGTACCTGACCATATCCCGGCTGCTCGCATTCGCCGACGAATGCTCCAG
GGGAAAGCATCTGGGAGCGGAGCGGCGGGCGCTCGTGCTGACACTGGGCTTCTGCGGATTGCGCTGGGGCGAGGCGGCAG
CGTTGAAGGCCCGTGACCTGGACTTCGGTCGGGGAGTGCTGCATGTGGGCGGCAACCTCGTGTACGTCGGGGCAAGATGG
GTCGAGGGCACTCCGAAGAACAGCGAGGAACGCGACGTGCCCATGCCTCTCATCGTCATGGAGGCGTTGAAACCGATGTG
CGGGGAACGCGAACCGGACGAAAGGGTGTTTCGTGATCTGCGGGGCGGCCCGATTATGAAGCAGAGCGCGGCAAAGACGA
CCGGCTGGTGGTATCACGCGCTGGTGCGCCTGGGCTGGCCGAAGGAGGAATGGCCCACACCGCATGACCTGCGCCATACC
GCGGCATCGCTGGCCGTGCACGCCGGGGCGAACGTCAAGGCGCTGCAGCGGATGCTCGGCCACAAGAACGCGAGCATGAC
GTTGGATGTGTATGCGGATCTGTTCGACAGCGACCTGATGGACGTGGCCCGTCTGCTCGACGCCGCAGTGCAGGTGGAGA
CGGGCATGGAAAAATGTGGGCAAAATGTGGGCAAAAGCGTTTTGGAGCCCGTATGA

Upstream 100 bases:

>100_bases
TTGGATTGTTGCTCATTATCCATCGACCATACCTTTCCTTTAATTCGCATACTATCCGACCAACCCTGAGATTCCAAGTG
GACAGCATGGAGGTGGACTG

Downstream 100 bases:

>100_bases
AACCCTCAGAAACGTTGGAATAACGCCATTCCCGTGAATGGTGGTTCTTCTGCAAGTTAAAAGACGCACTGAGCTGAGAG
TGGATGCGTTCTTGGCTCCC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MANVTRYKTSKGENRYRVRYRKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGKRRVGDLYEQWLKEKWPF
WKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDIIASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVEL
PKLPRRKSRRVYLTISRLLAFADECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARW
VEGTPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVRLGWPKEEWPTPHDLRHT
AASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDVARLLDAAVQVETGMEKCGQNVGKSVLEPV

Sequences:

>Translated_391_residues
MANVTRYKTSKGENRYRVRYRKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGKRRVGDLYEQWLKEKWPF
WKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDIIASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVEL
PKLPRRKSRRVYLTISRLLAFADECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARW
VEGTPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVRLGWPKEEWPTPHDLRHT
AASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDVARLLDAAVQVETGMEKCGQNVGKSVLEPV
>Mature_390_residues
ANVTRYKTSKGENRYRVRYRKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGKRRVGDLYEQWLKEKWPFW
KETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDIIASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELP
KLPRRKSRRVYLTISRLLAFADECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWV
EGTPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVRLGWPKEEWPTPHDLRHTA
ASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDVARLLDAAVQVETGMEKCGQNVGKSVLEPV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44473; Mature: 44341

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANVTRYKTSKGENRYRVRYRKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPE
CCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCC
DGKRRVGDLYEQWLKEKWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISD
CHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHH
IIASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLA
HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHH
FADECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARW
HHHHHHCCCCCCCCCCEEEEEEHHHCCCCCCHHHHEECCCCCCCCEEEECCCEEEEEEEE
VEGTPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHA
ECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHCCCCCHHHHHH
LVRLGWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLM
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHH
DVARLLDAAVQVETGMEKCGQNVGKSVLEPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANVTRYKTSKGENRYRVRYRKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPE
CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCC
DGKRRVGDLYEQWLKEKWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISD
CHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHH
IIASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLA
HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHH
FADECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARW
HHHHHHCCCCCCCCCCEEEEEEHHHCCCCCCHHHHEECCCCCCCCEEEECCCEEEEEEEE
VEGTPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHA
ECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHCCCCCHHHHHH
LVRLGWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLM
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHH
DVARLLDAAVQVETGMEKCGQNVGKSVLEPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA