Click here to switch to the map view.

The map label for this gene is nusB [H]

Identifier: 213691632

GI number: 213691632

Start: 854004

End: 854567

Strand: Direct

Name: nusB [H]

Synonym: Blon_0736

Alternate gene names: 213691632

Gene position: 854004-854567 (Clockwise)

Preceding gene: 213691631

Following gene: 213691633

Centisome position: 30.15

GC content: 60.46

Gene sequence:

>564_bases
ATGGCACGTTCCACCGCGCGCAAAAGGGCTCTGAACACCCTGTACGAAGCCGACGAAAAAAACCAGGATATTCTCTCCCT
GCTTGACGAACGCATCGCACATCCCGGTGCCCAGACCCCGCTTCCCGACTATGCCATTGAAATCGTCAAGGGCGTGGCCG
AGCACCGTCGTCAGATAGACATGACCCTGGACGAACACTCCACGGGTTGGAAGGTCCGCCGTATGGGCGTGGTCGATCGC
AACATTCTGCGTATCGCCGCTTGGGAGATTCTGTTCAACGATGATGTGCCGGACAAGGTCGCTATCGACGAGGCTCTGGC
ATTGGCCAAGACCCTGTGCGATGACGATTCGCCCGCTTTCATCCATGGCCTGCTGTCTGCGGTGTGCACCGCCAAGAACG
CAGCACCGGCACCGGAGTCCGTGGCGGAAGAGGCCGATGAGGAATCGTCCGATTCCGATGCCGCCGCATCCGATCCGACC
GATGAGGGCGATGTTTCCGATTCGTCCGGTGCATCCGACGAGCCCGCTGCCCCGTCCGCTGAGATTCAGCCGACGGTCGA
TTAG

Upstream 100 bases:

>100_bases
GATCAACACCGAGGATGGTTCCTACACCGGCCGCGAGAACAACTGATCTCCGCATCCTCAACAGACGACCGACCGTATAA
AGGACTAGGACAGCAGCAGT

Downstream 100 bases:

>100_bases
TCATTTGTTGTTCAGCCTCCCCATTCGGGAGGCTTTTTCATGGGCGGACACTTGTGTCGCCGTACATTCTCAAGTCGGCA
CCTTGCCGACAGCCCCGCCA

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MARSTARKRALNTLYEADEKNQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQIDMTLDEHSTGWKVRRMGVVDR
NILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDDSPAFIHGLLSAVCTAKNAAPAPESVAEEADEESSDSDAAASDPT
DEGDVSDSSGASDEPAAPSAEIQPTVD

Sequences:

>Translated_187_residues
MARSTARKRALNTLYEADEKNQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQIDMTLDEHSTGWKVRRMGVVDR
NILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDDSPAFIHGLLSAVCTAKNAAPAPESVAEEADEESSDSDAAASDPT
DEGDVSDSSGASDEPAAPSAEIQPTVD
>Mature_186_residues
ARSTARKRALNTLYEADEKNQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQIDMTLDEHSTGWKVRRMGVVDRN
ILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDDSPAFIHGLLSAVCTAKNAAPAPESVAEEADEESSDSDAAASDPTD
EGDVSDSSGASDEPAAPSAEIQPTVD

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 20079; Mature: 19948

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSTARKRALNTLYEADEKNQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQID
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
MTLDEHSTGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDDSPAF
CHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
IHGLLSAVCTAKNAAPAPESVAEEADEESSDSDAAASDPTDEGDVSDSSGASDEPAAPSA
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EIQPTVD
CCCCCCC
>Mature Secondary Structure 
ARSTARKRALNTLYEADEKNQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQID
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
MTLDEHSTGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDDSPAF
CHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
IHGLLSAVCTAKNAAPAPESVAEEADEESSDSDAAASDPTDEGDVSDSSGASDEPAAPSA
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EIQPTVD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA