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The map label for this gene is ycaJ [C]

Identifier: 213691612

GI number: 213691612

Start: 825822

End: 827219

Strand: Direct

Name: ycaJ [C]

Synonym: Blon_0716

Alternate gene names: 213691612

Gene position: 825822-827219 (Clockwise)

Preceding gene: 213691611

Following gene: 213691614

Centisome position: 29.15

GC content: 62.73

Gene sequence:

>1398_bases
ATGAGTGAGAACGATTTGTTTGGGGTGGCTGATGCGCCGGAGTCGATGACACGGCCGTTGGCGGTGCGCATGCGTCCACG
CACTTTGGACGAGGTGATTGGCCAAACGCAGGTGTTGGGCCAGGGCTCGCCGCTGCGCCGCCTCGCCAATCCGGCCAGCA
AAGGCAGTCTCACCGCGCCGAGCTCCGTAATCCTGTTCGGCCCTCCAGGCGTCGGCAAAACCACGCTCGCCACCATCGTG
GCCGGCCAATCCGGCCGCGTGTTTGAGGAACTCTCCGCCGTGACATCCGGCGTCAAAGACGTGCGCGACGTACTCACCCG
CGCTCACGAACGGCTCGTGTCACGCGGCCAGGAAACCGTACTGTTCATCGACGAGGTGCATCGCTTCTCCAAATCCCAGC
AGGATGCGCTGCTTCCCGCCGTCGAAAACCGCGACGTGACCTTTATCGGCGCCACCACCGAGAACCCGAGCTTTTCCATC
ATCAAACCGTTGCTCTCCCGTTCGGTGGTCGTCAAGCTTGAGTCATTGGAGCCTGATCAGCTCACCGAACTGGTGCAGCG
CGCGCTGACTGATGACCGCGGTCTCAAGGGCGAGGTCAAAGCCACGGACGAAGCCATCGCCGATATCGTGCGCATGGCCG
GTGGCGACGCACGCAAGAGTCTCACGATTCTGGAGGCCGCGGCTGGCGCGGTCACCGGCGACGAAGCCCGCAAAAAGGGC
GCACGCCGACCCATCATCACCCCCGAAATCGTGGCTACGGTAATGGACACCGCCACCGTGCGCTACGACAAAGACGGCGA
TGACCATTACGACGTGATTTCCGCATTCATCAAATCCATGCGGGGCTCCGATCCGGATGCCGCCATCCATTATCTGGCGC
GCATGCTGAAAGCGGGTGAAGATCCGCGCTTCATCGCCCGTCGCATCATGATTGCCGCCAGCGAGGAAGTCGGCATGGCC
GCCCCGCAGATTTTGCAGGTCACCGTGGCCGCGGCGCAGGCCGTGGCGCTGGTCGGCATGCCTGAGGCACGTATTATTTT
GGCCGAAGCCACGATTGCCGTGGCCACCGCGCCCAAATCAAACGCCAGCTATAACGCCATCAACCAGGCGCTCGCGGACG
TGGATGCCGGCAAGATCGGCGCTGTTCCGCTGTATTTGAGGAACGCCCCCACCAAGCTTATGAAAGAGTGGGGCAACCAC
GAGGGCTACAAGTATGCGCACGATTGGCCCGGTGCCGTGGCACCGCAGGAATATATGCCCGAAGAGCTGCGTGGCACCGA
GTACTACCATCCCAACGATCGCGGCTACGAACACGAAGTCAGCCAGCGTCTCGTCCGAATCCGCACGATACTGCACGGTG
ACGAATCCGGGCGGGAGGCGTCGCGGGCCGCGGACTGA

Upstream 100 bases:

>100_bases
TACAAGGTGAGTAACTGATTCCTTTCCTGGCTCCCCTCTCTGAGGGAAGCCAAGGTGTAGCTCGAACGTCTGTTCGAACA
CTGAGGTACTATAGGACTTT

Downstream 100 bases:

>100_bases
CGGTCTTAGGCGCGCCGGCGTGAGGCGCGAATGCGGAACGCGGTGGCCAGACAGCACCAGCCAATCAGGCAGATAACCGT
CATCGTGGCAAACGTCCATG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSENDLFGVADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIV
AGQSGRVFEELSAVTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSI
IKPLLSRSVVVKLESLEPDQLTELVQRALTDDRGLKGEVKATDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARKKG
ARRPIITPEIVATVMDTATVRYDKDGDDHYDVISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGMA
APQILQVTVAAAQAVALVGMPEARIILAEATIAVATAPKSNASYNAINQALADVDAGKIGAVPLYLRNAPTKLMKEWGNH
EGYKYAHDWPGAVAPQEYMPEELRGTEYYHPNDRGYEHEVSQRLVRIRTILHGDESGREASRAAD

Sequences:

>Translated_465_residues
MSENDLFGVADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIV
AGQSGRVFEELSAVTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSI
IKPLLSRSVVVKLESLEPDQLTELVQRALTDDRGLKGEVKATDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARKKG
ARRPIITPEIVATVMDTATVRYDKDGDDHYDVISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGMA
APQILQVTVAAAQAVALVGMPEARIILAEATIAVATAPKSNASYNAINQALADVDAGKIGAVPLYLRNAPTKLMKEWGNH
EGYKYAHDWPGAVAPQEYMPEELRGTEYYHPNDRGYEHEVSQRLVRIRTILHGDESGREASRAAD
>Mature_464_residues
SENDLFGVADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVA
GQSGRVFEELSAVTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSII
KPLLSRSVVVKLESLEPDQLTELVQRALTDDRGLKGEVKATDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARKKGA
RRPIITPEIVATVMDTATVRYDKDGDDHYDVISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGMAA
PQILQVTVAAAQAVALVGMPEARIILAEATIAVATAPKSNASYNAINQALADVDAGKIGAVPLYLRNAPTKLMKEWGNHE
GYKYAHDWPGAVAPQEYMPEELRGTEYYHPNDRGYEHEVSQRLVRIRTILHGDESGREASRAAD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=443, Percent_Identity=40.4063205417607, Blast_Score=302, Evalue=6e-82,
Organism=Homo sapiens, GI18426904, Length=443, Percent_Identity=36.7945823927765, Blast_Score=255, Evalue=6e-68,
Organism=Escherichia coli, GI1787119, Length=437, Percent_Identity=44.1647597254005, Blast_Score=343, Evalue=1e-95,
Organism=Escherichia coli, GI1788167, Length=293, Percent_Identity=29.6928327645051, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786676, Length=255, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=427, Percent_Identity=36.768149882904, Blast_Score=274, Evalue=2e-74,
Organism=Drosophila melanogaster, GI17647857, Length=301, Percent_Identity=27.5747508305648, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50235; Mature: 50103

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENDLFGVADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAP
CCCCCCEECCCCCHHHCCCEEEEECCCHHHHHHCCHHCCCCCCHHHHHCCCCCCCCCCCC
SSVILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLVSRGQETV
CEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLESLEPDQ
EEHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCEEEEEECCCCHHH
LTELVQRALTDDRGLKGEVKATDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARKKG
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCC
ARRPIITPEIVATVMDTATVRYDKDGDDHYDVISAFIKSMRGSDPDAAIHYLARMLKAGE
CCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
DPRFIARRIMIAASEEVGMAAPQILQVTVAAAQAVALVGMPEARIILAEATIAVATAPKS
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCC
NASYNAINQALADVDAGKIGAVPLYLRNAPTKLMKEWGNHEGYKYAHDWPGAVAPQEYMP
CCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHCC
EELRGTEYYHPNDRGYEHEVSQRLVRIRTILHGDESGREASRAAD
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCC
>Mature Secondary Structure 
SENDLFGVADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAP
CCCCCEECCCCCHHHCCCEEEEECCCHHHHHHCCHHCCCCCCHHHHHCCCCCCCCCCCC
SSVILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLVSRGQETV
CEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLESLEPDQ
EEHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCEEEEEECCCCHHH
LTELVQRALTDDRGLKGEVKATDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARKKG
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCC
ARRPIITPEIVATVMDTATVRYDKDGDDHYDVISAFIKSMRGSDPDAAIHYLARMLKAGE
CCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
DPRFIARRIMIAASEEVGMAAPQILQVTVAAAQAVALVGMPEARIILAEATIAVATAPKS
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCC
NASYNAINQALADVDAGKIGAVPLYLRNAPTKLMKEWGNHEGYKYAHDWPGAVAPQEYMP
CCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHCC
EELRGTEYYHPNDRGYEHEVSQRLVRIRTILHGDESGREASRAAD
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]