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The map label for this gene is hup

Identifier: 213691575

GI number: 213691575

Start: 781004

End: 781285

Strand: Reverse

Name: hup

Synonym: Blon_0679

Alternate gene names: 213691575

Gene position: 781285-781004 (Counterclockwise)

Preceding gene: 213691576

Following gene: 213691574

Centisome position: 27.58

GC content: 61.35

Gene sequence:

>282_bases
ATGGCATACAACAAGTCTGATCTCGTCTCGAAGATCGCCCAGAAGTCCAACCTGACCAAGGCTCAGGCCGAGGCTGCTGT
TAACGCCTTCCAGGATGTGTTCGTCGAGGCTATGAAGTCCGGCGAAGGCCTGAAGCTCACCGGCCTGTTCTCCGCTGAGC
GCGTCAAGCGCGCCGCTCGCACTGGCCGCAACCCGCGTACTGGCGAGCAGATTGACATTCCGGCTTCCTACGGCGTTCGC
ATCTCCGCCGGCTCCCTGCTGAAGAAGGCCGTCACCGAGTGA

Upstream 100 bases:

>100_bases
CTTATACGATGCGGGTTTTCGCAGGAACATGCGCTAGTATCATTGATGAAAACGTGGACGAAGCAAAAGTGCTCGCCCCC
TGACCCAAGAAGGATGCTTT

Downstream 100 bases:

>100_bases
CCTTCTGCTCGTAGCGATTACTTCGAGCATTACTGACGACAAAGACCCCGACCGAGATGGTCGGGGTCTTTTTGTTGCAG
TGCTTAGACGGGGGGCTATA

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MAYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGRNPRTGEQIDIPASYGVR
ISAGSLLKKAVTE

Sequences:

>Translated_93_residues
MAYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGRNPRTGEQIDIPASYGVR
ISAGSLLKKAVTE
>Mature_92_residues
AYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGRNPRTGEQIDIPASYGVRI
SAGSLLKKAVTE

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=39.3258426966292, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=41.5730337078652, Blast_Score=62, Evalue=6e-12,

Paralogues:

None

Copy number: 1380 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): DBH1_BIFLO (P17615)

Other databases:

- EMBL:   AE014295
- PIR:   A43768
- RefSeq:   NP_696945.1
- ProteinModelPortal:   P17615
- SMR:   P17615
- GeneID:   1022128
- GenomeReviews:   AE014295_GR
- KEGG:   blo:BL1798
- HOGENOM:   HBG705085
- OMA:   RSNATKA
- ProtClustDB:   CLSK904913
- BioCyc:   BLON206672:BL1798-MONOMER
- InterPro:   IPR000119
- InterPro:   IPR010992
- Gene3D:   G3DSA:4.10.520.10
- SMART:   SM00411

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 9958; Mature: 9826

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAAR
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH
TGRNPRTGEQIDIPASYGVRISAGSLLKKAVTE
CCCCCCCCCEEECCCCCCEEECHHHHHHHHHCC
>Mature Secondary Structure 
AYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAAR
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH
TGRNPRTGEQIDIPASYGVRISAGSLLKKAVTE
CCCCCCCCCEEECCCCCCEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12381787; 2116910