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The map label for this gene is nedR [H]

Identifier: 213691541

GI number: 213691541

Start: 739346

End: 740104

Strand: Direct

Name: nedR [H]

Synonym: Blon_0642

Alternate gene names: 213691541

Gene position: 739346-740104 (Clockwise)

Preceding gene: 213691540

Following gene: 213691542

Centisome position: 26.1

GC content: 63.5

Gene sequence:

>759_bases
ATGAGCAGTCAGGAGAACACGATCATGCGGCTGCAGCCCGGTGCGTTGCAGCAGCGGACGCCGATGCGCAGCCGCTGCGA
TGTGACGATGGACGCGATCAAATCGTATATTCTGCGGGAGCGGCTCCAGCCGGGCGATCTGCTGCCGACGGAGATCGAAC
TGTGCGAGGCCGTCGGCGCTTCGCGTTCGTCCGTGCGCGAAGCGGTGCGCAAGCTCGAAGGGCTCAACATCGTCAATGTC
GAACACGGCAGGGGGACATTCGTCGGTTCGCTGTCCCTTGACCCCATGGTGGAGACGCTGGCGTTTCGCTCGATGGTGTC
GGTGGGCAAGAACTTCGACGATCTGAAGGACGTCGTGGAGCTGAGGAGGTTCCTCGACCTCGGATGCGCGGATGAGGTGT
GCGCGAAGGTCAAGGGGACGGAACAGCCCGAGCTCGATGCGCTCGTCGACGCCATGGTCTCGTCCGCCGAACGGGGCGAG
GATTTCCTGTATGCCGACATCGACTTCCATATGGGACTGCTGGATCCGCTCGGCAACACCATCGCCAAGCAGATGGTGCA
TTCCCTGTGGCTCGTGCACATGGCCGTACTCCCGCAGATCGGCTTGGCGCCTTCGGAGAAGATGCTTGACACGGCCGAGG
CGCACCGTCGCATGCTGGATGCGGCGATCGCCGGCGACGCCCAGATGTACCGTGAGGCCGTGCGCGAGCATTACCGGCCG
ATCGAATCGATACTGCGCGAACACCTCCCCGTGCGCTGA

Upstream 100 bases:

>100_bases
GGTGGGGCCGTGGGCGTCGCCGTCCCCGCGTCAGGTCGGTGTGCGTGACGGTGGTGGGGCGTCTTGACGGCGCGGTGCGA
TGGTTTTTGGAGGAACCGCA

Downstream 100 bases:

>100_bases
CGCGTGGGCGCTGCGTGGGATCGGTCCACGATCCGTATGCGCCGCCCGACACGAGGCGCGGTGCACTGATATACATCAGA
TGTCTGATGTATAATCGGGG

Product: GntR domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSSQENTIMRLQPGALQQRTPMRSRCDVTMDAIKSYILRERLQPGDLLPTEIELCEAVGASRSSVREAVRKLEGLNIVNV
EHGRGTFVGSLSLDPMVETLAFRSMVSVGKNFDDLKDVVELRRFLDLGCADEVCAKVKGTEQPELDALVDAMVSSAERGE
DFLYADIDFHMGLLDPLGNTIAKQMVHSLWLVHMAVLPQIGLAPSEKMLDTAEAHRRMLDAAIAGDAQMYREAVREHYRP
IESILREHLPVR

Sequences:

>Translated_252_residues
MSSQENTIMRLQPGALQQRTPMRSRCDVTMDAIKSYILRERLQPGDLLPTEIELCEAVGASRSSVREAVRKLEGLNIVNV
EHGRGTFVGSLSLDPMVETLAFRSMVSVGKNFDDLKDVVELRRFLDLGCADEVCAKVKGTEQPELDALVDAMVSSAERGE
DFLYADIDFHMGLLDPLGNTIAKQMVHSLWLVHMAVLPQIGLAPSEKMLDTAEAHRRMLDAAIAGDAQMYREAVREHYRP
IESILREHLPVR
>Mature_251_residues
SSQENTIMRLQPGALQQRTPMRSRCDVTMDAIKSYILRERLQPGDLLPTEIELCEAVGASRSSVREAVRKLEGLNIVNVE
HGRGTFVGSLSLDPMVETLAFRSMVSVGKNFDDLKDVVELRRFLDLGCADEVCAKVKGTEQPELDALVDAMVSSAERGED
FLYADIDFHMGLLDPLGNTIAKQMVHSLWLVHMAVLPQIGLAPSEKMLDTAEAHRRMLDAAIAGDAQMYREAVREHYRPI
ESILREHLPVR

Specific function: May serve as a transcriptional regulator [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994955, Length=198, Percent_Identity=21.2121212121212, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711 [H]

Pfam domain/function: PF07729 FCD [H]

EC number: NA

Molecular weight: Translated: 28143; Mature: 28012

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQENTIMRLQPGALQQRTPMRSRCDVTMDAIKSYILRERLQPGDLLPTEIELCEAVGA
CCCCCCCEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
SRSSVREAVRKLEGLNIVNVEHGRGTFVGSLSLDPMVETLAFRSMVSVGKNFDDLKDVVE
CHHHHHHHHHHHCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LRRFLDLGCADEVCAKVKGTEQPELDALVDAMVSSAERGEDFLYADIDFHMGLLDPLGNT
HHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH
IAKQMVHSLWLVHMAVLPQIGLAPSEKMLDTAEAHRRMLDAAIAGDAQMYREAVREHYRP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IESILREHLPVR
HHHHHHHHCCCC
>Mature Secondary Structure 
SSQENTIMRLQPGALQQRTPMRSRCDVTMDAIKSYILRERLQPGDLLPTEIELCEAVGA
CCCCCCEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
SRSSVREAVRKLEGLNIVNVEHGRGTFVGSLSLDPMVETLAFRSMVSVGKNFDDLKDVVE
CHHHHHHHHHHHCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LRRFLDLGCADEVCAKVKGTEQPELDALVDAMVSSAERGEDFLYADIDFHMGLLDPLGNT
HHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH
IAKQMVHSLWLVHMAVLPQIGLAPSEKMLDTAEAHRRMLDAAIAGDAQMYREAVREHYRP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IESILREHLPVR
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1400240 [H]