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The map label for this gene is yddU [C]

Identifier: 213691533

GI number: 213691533

Start: 726362

End: 728530

Strand: Direct

Name: yddU [C]

Synonym: Blon_0634

Alternate gene names: 213691533

Gene position: 726362-728530 (Clockwise)

Preceding gene: 213691532

Following gene: 213691534

Centisome position: 25.64

GC content: 53.94

Gene sequence:

>2169_bases
ATGCCAGAAATGGGCGGAATGCCGTCCGACAACGAGCTGGTGCCTTTCTTCACATTCGAAGACATCGATCATGCGCTCGA
AAACGGCGAATTCTGCTGTTATCTGCAGCCTAAATGCAATGCGGAGACAGGAACCATTGTAGGAGCTGAGGCGTTGGTGC
GCTGGAATCACCCCAAATATGGCGTGATTCCCCCAAGATGGTTCGTCCCGGTATTGGAAAGAGCCGGGCGTATCTGCCAT
GTGGATATGTTCGTATGGCGCTTCGTGGTTGAGATGCTGGGCAGATGGGAGCGTGAAGGACGCAATCTGGTACCGGTTTC
CGTGAACGTGTCCATGATGGATATCGACCAGATGGATGTGGCCGACATGATCGGCGGACTGTTGAACGAATATGACGTCG
ACGCGCGTCTGTTGCGGGTGGAAATCACCGAAAGCACCGTGGCGAAAAACCTGTCCATGGTGAAGGACACCATCCGTAAA
CTGCATGCGAGAGGCATCGTGGTGCTGATGGATGATTTCGGTTCGGCATATTCCTCGCTGAACATGCTCAAAGACATTAA
TGTCGATATGATCAAACTGGACACGAAGTTCATCGAGCTGAGCAAGGAGAATGCCGGTAAAGGCGTGAAAATCATCCAAT
CCATAATTGTGATGGCTAAGAAGCTGCATCTGATGGTCATCGCCGAGGGCGCCCAGACCAAGGAACAGGTCGATTGGCTG
GAAGCAGTCGGATGCGGATACATCCAAGGGTATTATTTCTACCCTCCACTGCCGGTGAAACGGATGGAAACGCTGTTGGC
CGAGCGTGCCGACGGTCGGCACTATTGGGATATGCCGTGCGATTACCTGGATCGCGGTCATGTGACCGTCAACGGCCGGG
TGCTGTTGGGAGTCTCCGCGTTGGCGGCCGACGCCTTTGAAATCCTGGCTGATGGTCTGGCGGAAATATCTCGGTTGAAT
GTGGCGACAGGCGAATACCGTGCCATCAAACGAGATGGGGTGATTCCCGATCCGGAAGTCGACGAATTCGGCGCCTACAT
GCGTGCGGTGACCGCCAGCCGGGTGGTGCATCCTGACGATGTCGGACGATTTCTCGCCGATCTGAATTTGTCTTCGATCC
GGGAACGGCTATACAGGCAGGAAACCGTGCTGGGGATATACCGCAGCGAGATATTGGCCAAAACCGGCGTAGTCACATTC
GCGGCGGTTCCCACTCACGCATGCTCCCCATCCGACCCTTGGGCTGTGGTGCTGGTCGGACGGAATCTGCCCATGGGACT
ATTGGCATGCAGTGATGCCGATAATTACCGCAGGGACTCGCTTACGGGACTACTCAACCGCAATGCCTACGATAACGATT
TGGAGTGCATCCAGGCCCCGCATGACAAGCCGTTGACGGTGGTGTACGTCGACATGAATGGACTGCATGAAATCAACAAC
CATTTGGGACATGCCAAGGGCGATTCAGTGTTGTGCTGCCTTGCGAATGCGATGCGTGCCTGCTTCGGGGACGACAGGAT
CTACCGCATCGGAGGTGATGAGTTCGTGATTATCAGCTGCAACCATACAGTGAGCCAAAGTATGCGTCGGATGGCGCGTA
TGCGTCGGGATTTTCTGAAAGGTGATTGGGATATATCCGTAGGCATGGCCGAATCCGATGATGGAGGGGATCTTCCAGAC
CTCATCAAGCAGGCGGAAATCCGTATGCGCCAGGACAAGAAACAGCATTACGTCAATGGTGGAGGCAAACGCCAGCTCCG
CATGCTCAACAACCAGCTTGAGAATATTCTGGTGCGCAATGGGGATGTGAGAATGCTGCTTGAATATCTGAATGTACGTT
ATCCGGTGTCATTTATCGTCAATCTGAATACCGATACGCAGCGTTCGATCATGGTGCCCGATTTCTTTCAGCGTATGCTT
GATGGTCATGGCGGTTCCTTCCGCGAAGCATTACGTGAGTTTTGCTGTGTGAGGGTTGTTCCCGAATATCAAGAAGGTCT
CCTGCGACTGCTTGACTACGATGTCGTCCGTAGCCGGCTCAAGTCGGAAGGTGCAGTGCAATGCGGTTACGTGAGGAACG
ACGGTGAGCGGTTCATGTTGACGATTCTTACCGACAGCAGATCCGCGGACGAGACCATGTGGGTGTTCGAACATAAGGTG
CTGCCGTAG

Upstream 100 bases:

>100_bases
TATCCGTGCGATTGACGGCGTCGAGGACGTCACACTGATACAGTACAACGGCGAATACCACGGATAGTTTTTTCGACGAG
GGGAGGACCGAGTGACCGAC

Downstream 100 bases:

>100_bases
CGGAAGGCTCGAGACCCTCAGAGGCATAGCCCTGGGATTCCGCAACCTCGACACCACCATCACCAGAAGCCTGCTGCACG
CCGGCGGCTTCAGGCACGCC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 722; Mature: 721

Protein sequence:

>722_residues
MPEMGGMPSDNELVPFFTFEDIDHALENGEFCCYLQPKCNAETGTIVGAEALVRWNHPKYGVIPPRWFVPVLERAGRICH
VDMFVWRFVVEMLGRWEREGRNLVPVSVNVSMMDIDQMDVADMIGGLLNEYDVDARLLRVEITESTVAKNLSMVKDTIRK
LHARGIVVLMDDFGSAYSSLNMLKDINVDMIKLDTKFIELSKENAGKGVKIIQSIIVMAKKLHLMVIAEGAQTKEQVDWL
EAVGCGYIQGYYFYPPLPVKRMETLLAERADGRHYWDMPCDYLDRGHVTVNGRVLLGVSALAADAFEILADGLAEISRLN
VATGEYRAIKRDGVIPDPEVDEFGAYMRAVTASRVVHPDDVGRFLADLNLSSIRERLYRQETVLGIYRSEILAKTGVVTF
AAVPTHACSPSDPWAVVLVGRNLPMGLLACSDADNYRRDSLTGLLNRNAYDNDLECIQAPHDKPLTVVYVDMNGLHEINN
HLGHAKGDSVLCCLANAMRACFGDDRIYRIGGDEFVIISCNHTVSQSMRRMARMRRDFLKGDWDISVGMAESDDGGDLPD
LIKQAEIRMRQDKKQHYVNGGGKRQLRMLNNQLENILVRNGDVRMLLEYLNVRYPVSFIVNLNTDTQRSIMVPDFFQRML
DGHGGSFREALREFCCVRVVPEYQEGLLRLLDYDVVRSRLKSEGAVQCGYVRNDGERFMLTILTDSRSADETMWVFEHKV
LP

Sequences:

>Translated_722_residues
MPEMGGMPSDNELVPFFTFEDIDHALENGEFCCYLQPKCNAETGTIVGAEALVRWNHPKYGVIPPRWFVPVLERAGRICH
VDMFVWRFVVEMLGRWEREGRNLVPVSVNVSMMDIDQMDVADMIGGLLNEYDVDARLLRVEITESTVAKNLSMVKDTIRK
LHARGIVVLMDDFGSAYSSLNMLKDINVDMIKLDTKFIELSKENAGKGVKIIQSIIVMAKKLHLMVIAEGAQTKEQVDWL
EAVGCGYIQGYYFYPPLPVKRMETLLAERADGRHYWDMPCDYLDRGHVTVNGRVLLGVSALAADAFEILADGLAEISRLN
VATGEYRAIKRDGVIPDPEVDEFGAYMRAVTASRVVHPDDVGRFLADLNLSSIRERLYRQETVLGIYRSEILAKTGVVTF
AAVPTHACSPSDPWAVVLVGRNLPMGLLACSDADNYRRDSLTGLLNRNAYDNDLECIQAPHDKPLTVVYVDMNGLHEINN
HLGHAKGDSVLCCLANAMRACFGDDRIYRIGGDEFVIISCNHTVSQSMRRMARMRRDFLKGDWDISVGMAESDDGGDLPD
LIKQAEIRMRQDKKQHYVNGGGKRQLRMLNNQLENILVRNGDVRMLLEYLNVRYPVSFIVNLNTDTQRSIMVPDFFQRML
DGHGGSFREALREFCCVRVVPEYQEGLLRLLDYDVVRSRLKSEGAVQCGYVRNDGERFMLTILTDSRSADETMWVFEHKV
LP
>Mature_721_residues
PEMGGMPSDNELVPFFTFEDIDHALENGEFCCYLQPKCNAETGTIVGAEALVRWNHPKYGVIPPRWFVPVLERAGRICHV
DMFVWRFVVEMLGRWEREGRNLVPVSVNVSMMDIDQMDVADMIGGLLNEYDVDARLLRVEITESTVAKNLSMVKDTIRKL
HARGIVVLMDDFGSAYSSLNMLKDINVDMIKLDTKFIELSKENAGKGVKIIQSIIVMAKKLHLMVIAEGAQTKEQVDWLE
AVGCGYIQGYYFYPPLPVKRMETLLAERADGRHYWDMPCDYLDRGHVTVNGRVLLGVSALAADAFEILADGLAEISRLNV
ATGEYRAIKRDGVIPDPEVDEFGAYMRAVTASRVVHPDDVGRFLADLNLSSIRERLYRQETVLGIYRSEILAKTGVVTFA
AVPTHACSPSDPWAVVLVGRNLPMGLLACSDADNYRRDSLTGLLNRNAYDNDLECIQAPHDKPLTVVYVDMNGLHEINNH
LGHAKGDSVLCCLANAMRACFGDDRIYRIGGDEFVIISCNHTVSQSMRRMARMRRDFLKGDWDISVGMAESDDGGDLPDL
IKQAEIRMRQDKKQHYVNGGGKRQLRMLNNQLENILVRNGDVRMLLEYLNVRYPVSFIVNLNTDTQRSIMVPDFFQRMLD
GHGGSFREALREFCCVRVVPEYQEGLLRLLDYDVVRSRLKSEGAVQCGYVRNDGERFMLTILTDSRSADETMWVFEHKVL
P

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=259, Percent_Identity=30.5019305019305, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1786507, Length=268, Percent_Identity=30.9701492537313, Blast_Score=138, Evalue=2e-33,
Organism=Escherichia coli, GI1787541, Length=244, Percent_Identity=31.9672131147541, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI87081743, Length=234, Percent_Identity=31.6239316239316, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI226510982, Length=247, Percent_Identity=33.6032388663968, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=30.5439330543933, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=32.4894514767932, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=28.75, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=28.2786885245902, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI87081980, Length=278, Percent_Identity=28.0575539568345, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788849, Length=241, Percent_Identity=28.6307053941909, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI87082096, Length=244, Percent_Identity=29.0983606557377, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1787410, Length=149, Percent_Identity=30.8724832214765, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000253
- InterPro:   IPR000014
- InterPro:   IPR008984 [H]

Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 81576; Mature: 81445

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEMGGMPSDNELVPFFTFEDIDHALENGEFCCYLQPKCNAETGTIVGAEALVRWNHPKY
CCCCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEECCCCCCCCCEEEECHHHEEECCCCC
GVIPPRWFVPVLERAGRICHVDMFVWRFVVEMLGRWEREGRNLVPVSVNVSMMDIDQMDV
CCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCHHHH
ADMIGGLLNEYDVDARLLRVEITESTVAKNLSMVKDTIRKLHARGIVVLMDDFGSAYSSL
HHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
NMLKDINVDMIKLDTKFIELSKENAGKGVKIIQSIIVMAKKLHLMVIAEGAQTKEQVDWL
HHHHHCCCEEEEECHHEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHH
EAVGCGYIQGYYFYPPLPVKRMETLLAERADGRHYWDMPCDYLDRGHVTVNGRVLLGVSA
HHHCCCCCCCEEECCCCCHHHHHHHHHHCCCCCEECCCCHHHHCCCCEEECCEEEEEHHH
LAADAFEILADGLAEISRLNVATGEYRAIKRDGVIPDPEVDEFGAYMRAVTASRVVHPDD
HHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
VGRFLADLNLSSIRERLYRQETVLGIYRSEILAKTGVVTFAAVPTHACSPSDPWAVVLVG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEC
RNLPMGLLACSDADNYRRDSLTGLLNRNAYDNDLECIQAPHDKPLTVVYVDMNGLHEINN
CCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEECCCCHHHHHH
HLGHAKGDSVLCCLANAMRACFGDDRIYRIGGDEFVIISCNHTVSQSMRRMARMRRDFLK
HCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHC
GDWDISVGMAESDDGGDLPDLIKQAEIRMRQDKKQHYVNGGGKRQLRMLNNQLENILVRN
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECC
GDVRMLLEYLNVRYPVSFIVNLNTDTQRSIMVPDFFQRMLDGHGGSFREALREFCCVRVV
CCHHHHHHHHCCCCCEEEEEECCCCCCCEEECHHHHHHHHCCCCCHHHHHHHHHHHEECC
PEYQEGLLRLLDYDVVRSRLKSEGAVQCGYVRNDGERFMLTILTDSRSADETMWVFEHKV
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEECCC
LP
CC
>Mature Secondary Structure 
PEMGGMPSDNELVPFFTFEDIDHALENGEFCCYLQPKCNAETGTIVGAEALVRWNHPKY
CCCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEECCCCCCCCCEEEECHHHEEECCCCC
GVIPPRWFVPVLERAGRICHVDMFVWRFVVEMLGRWEREGRNLVPVSVNVSMMDIDQMDV
CCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCHHHH
ADMIGGLLNEYDVDARLLRVEITESTVAKNLSMVKDTIRKLHARGIVVLMDDFGSAYSSL
HHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
NMLKDINVDMIKLDTKFIELSKENAGKGVKIIQSIIVMAKKLHLMVIAEGAQTKEQVDWL
HHHHHCCCEEEEECHHEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHH
EAVGCGYIQGYYFYPPLPVKRMETLLAERADGRHYWDMPCDYLDRGHVTVNGRVLLGVSA
HHHCCCCCCCEEECCCCCHHHHHHHHHHCCCCCEECCCCHHHHCCCCEEECCEEEEEHHH
LAADAFEILADGLAEISRLNVATGEYRAIKRDGVIPDPEVDEFGAYMRAVTASRVVHPDD
HHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
VGRFLADLNLSSIRERLYRQETVLGIYRSEILAKTGVVTFAAVPTHACSPSDPWAVVLVG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEC
RNLPMGLLACSDADNYRRDSLTGLLNRNAYDNDLECIQAPHDKPLTVVYVDMNGLHEINN
CCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEECCCCHHHHHH
HLGHAKGDSVLCCLANAMRACFGDDRIYRIGGDEFVIISCNHTVSQSMRRMARMRRDFLK
HCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHC
GDWDISVGMAESDDGGDLPDLIKQAEIRMRQDKKQHYVNGGGKRQLRMLNNQLENILVRN
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECC
GDVRMLLEYLNVRYPVSFIVNLNTDTQRSIMVPDFFQRMLDGHGGSFREALREFCCVRVV
CCHHHHHHHHCCCCCEEEEEECCCCCCCEEECHHHHHHHHCCCCCHHHHHHHHHHHEECC
PEYQEGLLRLLDYDVVRSRLKSEGAVQCGYVRNDGERFMLTILTDSRSADETMWVFEHKV
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEECCC
LP
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]