| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691530
Identifier: 213691530
GI number: 213691530
Start: 722942
End: 724753
Strand: Direct
Name: 213691530
Synonym: Blon_0631
Alternate gene names: NA
Gene position: 722942-724753 (Clockwise)
Preceding gene: 213691529
Following gene: 213691531
Centisome position: 25.52
GC content: 51.88
Gene sequence:
>1812_bases ATGACATGGTGGAATCGACGCAGCGCAAAAGCCATTACCGCGCTTGTCAAGCGGATAGCGGCATTGATGGCAATACTGAC GGTGCTTTCCTGCGCCGGATGCGCGACCTCGACACCTGGCGAAAGCGGGCAATCGCAATCATCGGATTCGTCGCAGACGC ATGAGCAAGTCAAGAAAAGCGCTGAACAAAGCATCGACGGCGCACACTTGCGTGACAACGAATCGTTATACAAGGTGTAT GACGATAGCGGCGTGGAAACCATGTATTTGACGGTATCGCGCGGTAATTCGTCGGAAGGCACCGACCATAGCTGGAGTGA AATCAACCAATACTCCGCAGATGACTATACGGCCATGGGCGTTGAACGCTACAAGGTCAATGGTCTGCTGCAGGTGGGCG ATGAGCAGGGTCCCGTCTCCGGCGAACTCGGCTTCGGCGAAAGCGCGCCGAACGCCACCGTGCAGATACGAGGCCAATCG TCAAGTAAATTTCAGCAGAAAAACTACAAGATCGAGTTGAAAAGCGGCAAAGGCAAGTGGCGTGGACAGCGCACCATCGC ATTGAACAAACATGTGAACGATGGCTTGCGTTTCCGCAACAAAATGGCGTACGACCTTATCAAGGGCATTGACCAGATGA TGGGCCTGCGCACGCAATTCGTGCACTTGTATGTGAAAGACGAGACCAGCGGATCGGATTCCTTCGACGATTACGGCCTG TACACGCAAGTCGAACAACTCAACAAAACCGCATTGCAGGCGCACGGACTCGACAAAAACGGCCAGTTGTACAAAGTCAA TGATTTTGAATTCTATCGAGACGAAGATGTGATCAAACTTGCCGACGATCCCGACTACGATCAGACGAAATTTGAGAAAA AACTCGAAATCAAAGGCGACAACGACCATACCAAACTGATCGCCATGCTGAATGATCTCAATGATTATTCCGTGCCGATG AGCGAAATCCTCGGCAAATATTTCGATACCGAAAACATCGCATATTGGATGGCATTCCAATTGTTGACCGGCAATATCGA CACGCAAAACCGTAATGTGTACCTATATAGTCCTACGAATTCGCATACTTTTTACCTGCTTGACTGGGACAACGACGGTA TGCTCATGCGCAAGGAATATGAGATCAGGCAACGTGCCGACGGCCAAAGCTGGGAAAACGGCATCAGCAACTATTGGGGC AACATACTGTTACGACGTTGCCTGCAGACCAAGTCGTTCCGCACCGCGCTCGATAAAGCCGTCAACGACGAATACAAATA CATGAGCGCCGGTCGCATCAATTCCATGGTGCGGCAGTATCGTTCCATCGTTGAGCCATACGTGCAGAAGATGCCCGACT CCATGCATGAGCCCCTGACGTCAAGCCAATACGACACGGTGGCAGACCAATTGCACAGCGAAATCGAGCAGAATTACCAG ACGTACCAAACCGGATTCAACAAGCCCATGCCGTTCTATATCGGCAAGCCGACTCCCGCCAACGGCAAGCTTAGGCTCAA CTGGGATGTGGCCTACGATTTCAACGATGAGGATCTGCGTTACGCCGTCACCGTGTCCAAGGACTATGCGGGCGACGACG TAGTGTTCTCGCAAAGAGATGTCGTGCTGCCGGAAGCCGTGATGGACATGCCTGACGAAGGCCAGTACTTCATCAAGGTG AGCGTGAGCAACGCGTCAGGCTACACACAAGACGCGTTCGACCATTACATCACCGACGGCAACAAGATTTACGGCACCAA ATGCTTCTATGTGAAAGCCGACGGCAGCATTGTGGAGGATGCCAATGAGTAG
Upstream 100 bases:
>100_bases GCGGATCGACCAATCATTGCATCGTCCAAGGCATGCACGGTCTTCTAACAAGGCGAATAATGCAGAAAACGGATGGCATA ATCGGGAGGAATCGTAAATC
Downstream 100 bases:
>100_bases CGGCCGCGGCAACCATGGCACGTCGCTGCTCGGCCGCATCGCGAACCGTGTCGGCGAAGAGCTTTCCGTTCCGCCGCGCA CGGCCAAGGAACGGTTCCGT
Product: membrane lipoprotein lipid attachment site
Products: NA
Alternate protein names: Spore Coat Protein H; Spore Coat Protein; Membrane Lipoprotein Lipid Attachment Site; Spore Coat Protein CotH
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MTWWNRRSAKAITALVKRIAALMAILTVLSCAGCATSTPGESGQSQSSDSSQTHEQVKKSAEQSIDGAHLRDNESLYKVY DDSGVETMYLTVSRGNSSEGTDHSWSEINQYSADDYTAMGVERYKVNGLLQVGDEQGPVSGELGFGESAPNATVQIRGQS SSKFQQKNYKIELKSGKGKWRGQRTIALNKHVNDGLRFRNKMAYDLIKGIDQMMGLRTQFVHLYVKDETSGSDSFDDYGL YTQVEQLNKTALQAHGLDKNGQLYKVNDFEFYRDEDVIKLADDPDYDQTKFEKKLEIKGDNDHTKLIAMLNDLNDYSVPM SEILGKYFDTENIAYWMAFQLLTGNIDTQNRNVYLYSPTNSHTFYLLDWDNDGMLMRKEYEIRQRADGQSWENGISNYWG NILLRRCLQTKSFRTALDKAVNDEYKYMSAGRINSMVRQYRSIVEPYVQKMPDSMHEPLTSSQYDTVADQLHSEIEQNYQ TYQTGFNKPMPFYIGKPTPANGKLRLNWDVAYDFNDEDLRYAVTVSKDYAGDDVVFSQRDVVLPEAVMDMPDEGQYFIKV SVSNASGYTQDAFDHYITDGNKIYGTKCFYVKADGSIVEDANE
Sequences:
>Translated_603_residues MTWWNRRSAKAITALVKRIAALMAILTVLSCAGCATSTPGESGQSQSSDSSQTHEQVKKSAEQSIDGAHLRDNESLYKVY DDSGVETMYLTVSRGNSSEGTDHSWSEINQYSADDYTAMGVERYKVNGLLQVGDEQGPVSGELGFGESAPNATVQIRGQS SSKFQQKNYKIELKSGKGKWRGQRTIALNKHVNDGLRFRNKMAYDLIKGIDQMMGLRTQFVHLYVKDETSGSDSFDDYGL YTQVEQLNKTALQAHGLDKNGQLYKVNDFEFYRDEDVIKLADDPDYDQTKFEKKLEIKGDNDHTKLIAMLNDLNDYSVPM SEILGKYFDTENIAYWMAFQLLTGNIDTQNRNVYLYSPTNSHTFYLLDWDNDGMLMRKEYEIRQRADGQSWENGISNYWG NILLRRCLQTKSFRTALDKAVNDEYKYMSAGRINSMVRQYRSIVEPYVQKMPDSMHEPLTSSQYDTVADQLHSEIEQNYQ TYQTGFNKPMPFYIGKPTPANGKLRLNWDVAYDFNDEDLRYAVTVSKDYAGDDVVFSQRDVVLPEAVMDMPDEGQYFIKV SVSNASGYTQDAFDHYITDGNKIYGTKCFYVKADGSIVEDANE >Mature_602_residues TWWNRRSAKAITALVKRIAALMAILTVLSCAGCATSTPGESGQSQSSDSSQTHEQVKKSAEQSIDGAHLRDNESLYKVYD DSGVETMYLTVSRGNSSEGTDHSWSEINQYSADDYTAMGVERYKVNGLLQVGDEQGPVSGELGFGESAPNATVQIRGQSS SKFQQKNYKIELKSGKGKWRGQRTIALNKHVNDGLRFRNKMAYDLIKGIDQMMGLRTQFVHLYVKDETSGSDSFDDYGLY TQVEQLNKTALQAHGLDKNGQLYKVNDFEFYRDEDVIKLADDPDYDQTKFEKKLEIKGDNDHTKLIAMLNDLNDYSVPMS EILGKYFDTENIAYWMAFQLLTGNIDTQNRNVYLYSPTNSHTFYLLDWDNDGMLMRKEYEIRQRADGQSWENGISNYWGN ILLRRCLQTKSFRTALDKAVNDEYKYMSAGRINSMVRQYRSIVEPYVQKMPDSMHEPLTSSQYDTVADQLHSEIEQNYQT YQTGFNKPMPFYIGKPTPANGKLRLNWDVAYDFNDEDLRYAVTVSKDYAGDDVVFSQRDVVLPEAVMDMPDEGQYFIKVS VSNASGYTQDAFDHYITDGNKIYGTKCFYVKADGSIVEDANE
Specific function: Unknown
COG id: COG5337
COG function: function code M; Spore coat assembly protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68638; Mature: 68507
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWWNRRSAKAITALVKRIAALMAILTVLSCAGCATSTPGESGQSQSSDSSQTHEQVKKS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AEQSIDGAHLRDNESLYKVYDDSGVETMYLTVSRGNSSEGTDHSWSEINQYSADDYTAMG HHHCCCCCEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEECC VERYKVNGLLQVGDEQGPVSGELGFGESAPNATVQIRGQSSSKFQQKNYKIELKSGKGKW EEEEEECEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCEEEEECCCCCC RGQRTIALNKHVNDGLRFRNKMAYDLIKGIDQMMGLRTQFVHLYVKDETSGSDSFDDYGL CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCH YTQVEQLNKTALQAHGLDKNGQLYKVNDFEFYRDEDVIKLADDPDYDQTKFEKKLEIKGD HHHHHHHHHHHHHHCCCCCCCCEEEECCCEEECCCCEEEECCCCCCCHHHHCEEEEECCC NDHTKLIAMLNDLNDYSVPMSEILGKYFDTENIAYWMAFQLLTGNIDTQNRNVYLYSPTN CCHHHHEEEHHCCCCCCCCHHHHHHHHCCCCCHHHEEEEEHHCCCCCCCCCEEEEECCCC SHTFYLLDWDNDGMLMRKEYEIRQRADGQSWENGISNYWGNILLRRCLQTKSFRTALDKA CCEEEEEEECCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNDEYKYMSAGRINSMVRQYRSIVEPYVQKMPDSMHEPLTSSQYDTVADQLHSEIEQNYQ HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHH TYQTGFNKPMPFYIGKPTPANGKLRLNWDVAYDFNDEDLRYAVTVSKDYAGDDVVFSQRD HHHHCCCCCCCEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCEEECCCC VVLPEAVMDMPDEGQYFIKVSVSNASGYTQDAFDHYITDGNKIYGTKCFYVKADGSIVED CCCCHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC ANE CCC >Mature Secondary Structure TWWNRRSAKAITALVKRIAALMAILTVLSCAGCATSTPGESGQSQSSDSSQTHEQVKKS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AEQSIDGAHLRDNESLYKVYDDSGVETMYLTVSRGNSSEGTDHSWSEINQYSADDYTAMG HHHCCCCCEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEECC VERYKVNGLLQVGDEQGPVSGELGFGESAPNATVQIRGQSSSKFQQKNYKIELKSGKGKW EEEEEECEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCEEEEECCCCCC RGQRTIALNKHVNDGLRFRNKMAYDLIKGIDQMMGLRTQFVHLYVKDETSGSDSFDDYGL CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCH YTQVEQLNKTALQAHGLDKNGQLYKVNDFEFYRDEDVIKLADDPDYDQTKFEKKLEIKGD HHHHHHHHHHHHHHCCCCCCCCEEEECCCEEECCCCEEEECCCCCCCHHHHCEEEEECCC NDHTKLIAMLNDLNDYSVPMSEILGKYFDTENIAYWMAFQLLTGNIDTQNRNVYLYSPTN CCHHHHEEEHHCCCCCCCCHHHHHHHHCCCCCHHHEEEEEHHCCCCCCCCCEEEEECCCC SHTFYLLDWDNDGMLMRKEYEIRQRADGQSWENGISNYWGNILLRRCLQTKSFRTALDKA CCEEEEEEECCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNDEYKYMSAGRINSMVRQYRSIVEPYVQKMPDSMHEPLTSSQYDTVADQLHSEIEQNYQ HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHH TYQTGFNKPMPFYIGKPTPANGKLRLNWDVAYDFNDEDLRYAVTVSKDYAGDDVVFSQRD HHHHCCCCCCCEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCEEECCCC VVLPEAVMDMPDEGQYFIKVSVSNASGYTQDAFDHYITDGNKIYGTKCFYVKADGSIVED CCCCHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC ANE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA