| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691367
Identifier: 213691367
GI number: 213691367
Start: 528317
End: 530338
Strand: Reverse
Name: 213691367
Synonym: Blon_0459
Alternate gene names: NA
Gene position: 530338-528317 (Counterclockwise)
Preceding gene: 213691368
Following gene: 213691365
Centisome position: 18.72
GC content: 62.36
Gene sequence:
>2022_bases ATGAGCGATCAAGCAACCCTGAAGGGATGGACCATCATCCCCACGCCGCAAACCATGCAGCATAAAGCGAACATCGCATT GCTGCCAATGTGCGGACGAATCAACGAAGCGCGCGCAGTCGGTGACGATCGGCACATACTTGCCGTGCAGCTCATCGACG ACATCCGCGCAGCCACCGGATTGGAATGGGATATCGCCACCGGCGACCGCTGGCCGGGATTCATCACCTTGACGACCTTT GACGACCCCCATGCACACCCGTCCGGTGCATATACGCTCGATGTCACCCCGGACGGCGTGACCGTAGCGGGAGCGGATTT CGAGGGTGTGCGTAACGGCGTGCAGACTTTACGCCAGCTCATCCGCCAATGCGGCGCCGCCCTGCCCTGCCTGCACATCG AGGACCGACCCGCCTTCGAAACGCGCGGCTACTACCTCGACGTCACCCGCGGGCGCGTCCCCACCCTCGACTGGCTCAAA CACTGGGCCGACAAGCTCTGCCTGTACAAATACAACCAGCTCCAGCTCTACATCGAACACACCTTCGCGTTCGACTCGAT GAGCGAGACCTGGCGCGGTTCCAGCCCGCTCACCCCGCGCGACATCCTCGCATTCGACGACTACTGCGCCGAGCGCGGCA TCGAGCTGGTCCCGTCGGTCTCCACGTTCGGACACCTCTACATGGCCCTGCGCACGCAATCCCTGCGCGACCTCGGCGAG TTCCCCGAAACCGCCGACGAGCCGTTCGGGTTCATCGACCGCATGCACCACCACACATTGAACATCGGCGACGACCGCGC CTTCGCCCTGTCGTGCCGGCTCATCGACGACTACCTGCAACTGTTCCGCTCCAACAAATTCAACATCTGCGCCGACGAGA CCTTCGACCTCGGCAAGGGCCGGTCCAAGCCCCTCGCCGACCGCATCGGCGTCGCGGCCATGTACGCCGACTACGTCACC CGCCTGTGCCGCCACCTCGAAGCCCAGGGCAGGCGGCCGATGATGTGGGGCGACATCGCCCTCGAACACCCCGAGATCCT CGACCGGCTCCCCGAAACCGTCACCCTGCTCAACTGGCAGTACGACCCTCAGGTCACGGACGAGAAGATCCACACCGTCG CCGAATCCGGTGCCAAGCAGATCGTATGCCCGGCCGTATGGTGCTGGAACGCGCTCCTGCCGCGCATCGACGACGCCTGG AGCAACATCACCCGCATGGCCCGCTACGGCAGGCAATACGGCGCCCAGGGCATGCTCGTCACCGACTGGGGCGACTTCGG CCACGTCAACGACCCACGCATGGCCATCCCCGGCATGATCATCGGTGCACAGGAATCATGGAACCCGAGGCGAATCCCGG ATGAGGCCGACATGCTCCGCCGTATCTCCCGACTCGAATACCACGACGCCAGCGGTGAACTGCTTAATATTCTTACGCAT GCAAGTCATGCGGCCAGTTTCGAATGGAACCACCTGATCACTTGGCTGGAACTTGATGACGGACAAGGCGGAGTCAACAC CGGGGTCCTGCAAACCATCCCGGGACTGCTGCCGGAAAACGAACGACCGGACGATGTGATCCGTTCCCTCCAGAACGAAA GCAAGACACCGTCACTTGCGGAATCCCGACGAATGCTGCTCCGCTATCTGAAACACCGCATCACGCTCGGCGAAACCGCA GATCACCTTCTGCAGGCCAGTGCCCGTCGAATCTCCGCGATCACCGCGACCGCAGGACCGCGGAACGCAGGAAACGCCGC TGCATTCCGCATAGCCGTCGAGGGACAACGACTGCTGAACCGGGTTGGCCTCCGGCTTGCGTCCGAGACCGGGATCACTG ACACTTTGCAACCGAACACCACGTCTCAACATAACGATGAGGCGAACCTTGCTGAAGCATTGGAGATCTGGATGGAGGCG TATGCGACGCAATGGAGCACGGTCAGCCGAGACTCCGAACTCCGTCGGCTGCAAGATACGGTGCGGGAGTTAACGGACCA TCTGCGCTTCCAATCCGTCTGA
Upstream 100 bases:
>100_bases CCGGGACCATTGCTGCGAGTGGTTCCGGCGCCGCGCGTCATCTCGGAACCCAAAACGCAATATAACGCAATCAAAGGTGA ACCACTGAGAAAGGACTTCC
Downstream 100 bases:
>100_bases TGCTGCGATTGTGAGACTTCGACCAACCAGATACCGAAATGCCGTGAGGGACCAGATTCAGATCCCTCACGGCATTTCCT ATACGAAGGTGTGCCACGTA
Product: glycoside hydrolase, family 20
Products: NA
Alternate protein names: Beta-N-Acetylhexosaminidase; Glycoside Hydrolase Family Protein; Glycosyl Hydrolase Family; N-Acetyl-Beta-Hexosaminidase; Beta-Hexosaminidase; Secreted Hydrolase; Glycoside Hydrolase; Family; Beta-N-Acetylglucosaminidase; Hydrolase Exported Protein; Glycosy Hydrolase Family Protein; Glycosyl Hydrolase-Related Protein; Glycosyl Hydrolase; NagZ Beta-N-Acetylhexosaminidase
Number of amino acids: Translated: 673; Mature: 672
Protein sequence:
>673_residues MSDQATLKGWTIIPTPQTMQHKANIALLPMCGRINEARAVGDDRHILAVQLIDDIRAATGLEWDIATGDRWPGFITLTTF DDPHAHPSGAYTLDVTPDGVTVAGADFEGVRNGVQTLRQLIRQCGAALPCLHIEDRPAFETRGYYLDVTRGRVPTLDWLK HWADKLCLYKYNQLQLYIEHTFAFDSMSETWRGSSPLTPRDILAFDDYCAERGIELVPSVSTFGHLYMALRTQSLRDLGE FPETADEPFGFIDRMHHHTLNIGDDRAFALSCRLIDDYLQLFRSNKFNICADETFDLGKGRSKPLADRIGVAAMYADYVT RLCRHLEAQGRRPMMWGDIALEHPEILDRLPETVTLLNWQYDPQVTDEKIHTVAESGAKQIVCPAVWCWNALLPRIDDAW SNITRMARYGRQYGAQGMLVTDWGDFGHVNDPRMAIPGMIIGAQESWNPRRIPDEADMLRRISRLEYHDASGELLNILTH ASHAASFEWNHLITWLELDDGQGGVNTGVLQTIPGLLPENERPDDVIRSLQNESKTPSLAESRRMLLRYLKHRITLGETA DHLLQASARRISAITATAGPRNAGNAAAFRIAVEGQRLLNRVGLRLASETGITDTLQPNTTSQHNDEANLAEALEIWMEA YATQWSTVSRDSELRRLQDTVRELTDHLRFQSV
Sequences:
>Translated_673_residues MSDQATLKGWTIIPTPQTMQHKANIALLPMCGRINEARAVGDDRHILAVQLIDDIRAATGLEWDIATGDRWPGFITLTTF DDPHAHPSGAYTLDVTPDGVTVAGADFEGVRNGVQTLRQLIRQCGAALPCLHIEDRPAFETRGYYLDVTRGRVPTLDWLK HWADKLCLYKYNQLQLYIEHTFAFDSMSETWRGSSPLTPRDILAFDDYCAERGIELVPSVSTFGHLYMALRTQSLRDLGE FPETADEPFGFIDRMHHHTLNIGDDRAFALSCRLIDDYLQLFRSNKFNICADETFDLGKGRSKPLADRIGVAAMYADYVT RLCRHLEAQGRRPMMWGDIALEHPEILDRLPETVTLLNWQYDPQVTDEKIHTVAESGAKQIVCPAVWCWNALLPRIDDAW SNITRMARYGRQYGAQGMLVTDWGDFGHVNDPRMAIPGMIIGAQESWNPRRIPDEADMLRRISRLEYHDASGELLNILTH ASHAASFEWNHLITWLELDDGQGGVNTGVLQTIPGLLPENERPDDVIRSLQNESKTPSLAESRRMLLRYLKHRITLGETA DHLLQASARRISAITATAGPRNAGNAAAFRIAVEGQRLLNRVGLRLASETGITDTLQPNTTSQHNDEANLAEALEIWMEA YATQWSTVSRDSELRRLQDTVRELTDHLRFQSV >Mature_672_residues SDQATLKGWTIIPTPQTMQHKANIALLPMCGRINEARAVGDDRHILAVQLIDDIRAATGLEWDIATGDRWPGFITLTTFD DPHAHPSGAYTLDVTPDGVTVAGADFEGVRNGVQTLRQLIRQCGAALPCLHIEDRPAFETRGYYLDVTRGRVPTLDWLKH WADKLCLYKYNQLQLYIEHTFAFDSMSETWRGSSPLTPRDILAFDDYCAERGIELVPSVSTFGHLYMALRTQSLRDLGEF PETADEPFGFIDRMHHHTLNIGDDRAFALSCRLIDDYLQLFRSNKFNICADETFDLGKGRSKPLADRIGVAAMYADYVTR LCRHLEAQGRRPMMWGDIALEHPEILDRLPETVTLLNWQYDPQVTDEKIHTVAESGAKQIVCPAVWCWNALLPRIDDAWS NITRMARYGRQYGAQGMLVTDWGDFGHVNDPRMAIPGMIIGAQESWNPRRIPDEADMLRRISRLEYHDASGELLNILTHA SHAASFEWNHLITWLELDDGQGGVNTGVLQTIPGLLPENERPDDVIRSLQNESKTPSLAESRRMLLRYLKHRITLGETAD HLLQASARRISAITATAGPRNAGNAAAFRIAVEGQRLLNRVGLRLASETGITDTLQPNTTSQHNDEANLAEALEIWMEAY ATQWSTVSRDSELRRLQDTVRELTDHLRFQSV
Specific function: Unknown
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75912; Mature: 75780
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDQATLKGWTIIPTPQTMQHKANIALLPMCGRINEARAVGDDRHILAVQLIDDIRAATG CCCCCEECCCEEECCCHHHHHCCCEEEEECCCCCCHHHHCCCCCCEEEEHHHHHHHHHCC LEWDIATGDRWPGFITLTTFDDPHAHPSGAYTLDVTPDGVTVAGADFEGVRNGVQTLRQL CCEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHH IRQCGAALPCLHIEDRPAFETRGYYLDVTRGRVPTLDWLKHWADKLCLYKYNQLQLYIEH HHHCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEECEEEEEEEE TFAFDSMSETWRGSSPLTPRDILAFDDYCAERGIELVPSVSTFGHLYMALRTQSLRDLGE HHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHC FPETADEPFGFIDRMHHHTLNIGDDRAFALSCRLIDDYLQLFRSNKFNICADETFDLGKG CCCCCCCCHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCEECCCCCCCCCC RSKPLADRIGVAAMYADYVTRLCRHLEAQGRRPMMWGDIALEHPEILDRLPETVTLLNWQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEECCCHHHHHHCCCCEEEEEEE YDPQVTDEKIHTVAESGAKQIVCPAVWCWNALLPRIDDAWSNITRMARYGRQYGAQGMLV CCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE TDWGDFGHVNDPRMAIPGMIIGAQESWNPRRIPDEADMLRRISRLEYHDASGELLNILTH ECCCCCCCCCCCCEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH ASHAASFEWNHLITWLELDDGQGGVNTGVLQTIPGLLPENERPDDVIRSLQNESKTPSLA HHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHH ESRRMLLRYLKHRITLGETADHLLQASARRISAITATAGPRNAGNAAAFRIAVEGQRLLN HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEEECHHHHHH RVGLRLASETGITDTLQPNTTSQHNDEANLAEALEIWMEAYATQWSTVSRDSELRRLQDT HHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH VRELTDHLRFQSV HHHHHHHHHCCCC >Mature Secondary Structure SDQATLKGWTIIPTPQTMQHKANIALLPMCGRINEARAVGDDRHILAVQLIDDIRAATG CCCCEECCCEEECCCHHHHHCCCEEEEECCCCCCHHHHCCCCCCEEEEHHHHHHHHHCC LEWDIATGDRWPGFITLTTFDDPHAHPSGAYTLDVTPDGVTVAGADFEGVRNGVQTLRQL CCEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHH IRQCGAALPCLHIEDRPAFETRGYYLDVTRGRVPTLDWLKHWADKLCLYKYNQLQLYIEH HHHCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEECEEEEEEEE TFAFDSMSETWRGSSPLTPRDILAFDDYCAERGIELVPSVSTFGHLYMALRTQSLRDLGE HHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHC FPETADEPFGFIDRMHHHTLNIGDDRAFALSCRLIDDYLQLFRSNKFNICADETFDLGKG CCCCCCCCHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCEECCCCCCCCCC RSKPLADRIGVAAMYADYVTRLCRHLEAQGRRPMMWGDIALEHPEILDRLPETVTLLNWQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEECCCHHHHHHCCCCEEEEEEE YDPQVTDEKIHTVAESGAKQIVCPAVWCWNALLPRIDDAWSNITRMARYGRQYGAQGMLV CCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE TDWGDFGHVNDPRMAIPGMIIGAQESWNPRRIPDEADMLRRISRLEYHDASGELLNILTH ECCCCCCCCCCCCEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH ASHAASFEWNHLITWLELDDGQGGVNTGVLQTIPGLLPENERPDDVIRSLQNESKTPSLA HHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHH ESRRMLLRYLKHRITLGETADHLLQASARRISAITATAGPRNAGNAAAFRIAVEGQRLLN HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEEECHHHHHH RVGLRLASETGITDTLQPNTTSQHNDEANLAEALEIWMEAYATQWSTVSRDSELRRLQDT HHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH VRELTDHLRFQSV HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA