| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is ydjK [C]
Identifier: 213691261
GI number: 213691261
Start: 399536
End: 400759
Strand: Direct
Name: ydjK [C]
Synonym: Blon_0345
Alternate gene names: 213691261
Gene position: 399536-400759 (Clockwise)
Preceding gene: 213691260
Following gene: 213691262
Centisome position: 14.1
GC content: 45.59
Gene sequence:
>1224_bases ATGTCAAAAATAATTAATTATAGTGAAGTACTGGAATCCAAACGTCTGATGGTTGGCGTCTTGTCGGTGTCTTTCTTATT GTCCGCTGGTAATGCTATTAGCGGAACGATTCCCGCGATGGAAGAAGCGTTCTCGAATATTTCGAAAGCCAATATTGAGA CACTAACGACCATACCGACAGCGGGAATTATGCTCGGAACCGTCCTCTCGGGTGTTTTCTCGAATTATCTAGGAAAAAAG AAATCCGTGCTCGCGGGTTTGATTATCGCTTTGGTTGGCGGTGTTATCCCCGCGTTCCTGCCTCAATACTGGCCAATCTT TATTTCGCGTTTCCTCTTTGGCGTGGGCATGGGTATCTTTAATCCGCTTTCTGTGTCCTATATCACCGATCTGTATGTGG GGGATCGTCAGCGTAGTCTTCTTGGATACCGCAATGCGGTTAGCAATCTGGGTGATACCATCATGCTTTTCGTTGCTGGT ATCTTGATTACCTTTGGTTGGAATATCACCTATCTGGTCTTCTTCGCCTTGCTGATACCGATTGTTTTAATAATTTTGTT CGTTCCAAAGGAATTCGATAATTTCGATATCAGGAACAGTGCTCTGGATGAGAATGGTCAGATTAGTGACAGTGTGTCTG ATGTCAAACCATCTACGAATCTCAAGGTGATCGAGGTTGGCGTTGTATTTATGGTTATCACTATGCTATATAACGCGATC CCGCTGAAATTTGCGAGCTATATTGTCACGGAGCATATCGGCACTGCCTCGACCGCCACATGGATCTTCAGCTTCCTGGT CTTGGCGGGCATTTTCTCCGGCGTGCTGTTCGAGAAGATTTCCAAGGTTTTCAAGCGTTTGACGGTGTTCGTATTCGAGA TTGTTATTGGCGTCGCCTATATCACGATTGCGTTCACCTACAACATTCCGTTGCTGACGGCTTTGGTGTTGATCTCTGGC TTTGGTTGGGGTATTATCAACCCGGCATTGACAGCGCGACTCGTAGATGTGTCGCCGATTAACTCTATGAATCTGAGTAC TTCAATAATTGTTATCTTTATCAGTGTTGGTTCTCTTATTTCCCCGTACTTCTTCGCAATGTTCGCGGGCTTGTTCGGTA ACGATTCGGCTGCGTTCGCTATTGTTGTCGGTGGTGCCCTGTATGTGGTCATGGCCGTGCTTGATTTCATCAAAATAAAG AAGAACAAGGAGCTGAGCATCTGA
Upstream 100 bases:
>100_bases TCAATGTGGGTAGGTGAAGGAGATATACGCAAGAATATCTAAGATATAAGTTCAAATTCTTAATCTTTTCAATGTTGATT TATATGTGTCTGGAGTGATA
Downstream 100 bases:
>100_bases TTGATTCGTGGTTGGAATCGTTGACGACGATTCCAACCCGGCAATCGGAAGCCGTTCCATCGCAACAAAGGAGTTCAATG ATGTCCACCGCAACTGGTTT
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: Facilitator Superfamily Transporter; Facilitator Superfamily Protein; Transporter Protein; Permease Of Facilitator Superfamily; Facilitator Superfamily Transporter Permease; General Substrate Transporter Facilitator Superfamily; MFS Family Transporter Protein; Permease; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; MFS Family Transporter; Multidrug Efflux Permease; Facilitator Family Protein; Facilitator Superfamily Transporter Efflux Protein; Ypothetical Protein SMU.
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSKIINYSEVLESKRLMVGVLSVSFLLSAGNAISGTIPAMEEAFSNISKANIETLTTIPTAGIMLGTVLSGVFSNYLGKK KSVLAGLIIALVGGVIPAFLPQYWPIFISRFLFGVGMGIFNPLSVSYITDLYVGDRQRSLLGYRNAVSNLGDTIMLFVAG ILITFGWNITYLVFFALLIPIVLIILFVPKEFDNFDIRNSALDENGQISDSVSDVKPSTNLKVIEVGVVFMVITMLYNAI PLKFASYIVTEHIGTASTATWIFSFLVLAGIFSGVLFEKISKVFKRLTVFVFEIVIGVAYITIAFTYNIPLLTALVLISG FGWGIINPALTARLVDVSPINSMNLSTSIIVIFISVGSLISPYFFAMFAGLFGNDSAAFAIVVGGALYVVMAVLDFIKIK KNKELSI
Sequences:
>Translated_407_residues MSKIINYSEVLESKRLMVGVLSVSFLLSAGNAISGTIPAMEEAFSNISKANIETLTTIPTAGIMLGTVLSGVFSNYLGKK KSVLAGLIIALVGGVIPAFLPQYWPIFISRFLFGVGMGIFNPLSVSYITDLYVGDRQRSLLGYRNAVSNLGDTIMLFVAG ILITFGWNITYLVFFALLIPIVLIILFVPKEFDNFDIRNSALDENGQISDSVSDVKPSTNLKVIEVGVVFMVITMLYNAI PLKFASYIVTEHIGTASTATWIFSFLVLAGIFSGVLFEKISKVFKRLTVFVFEIVIGVAYITIAFTYNIPLLTALVLISG FGWGIINPALTARLVDVSPINSMNLSTSIIVIFISVGSLISPYFFAMFAGLFGNDSAAFAIVVGGALYVVMAVLDFIKIK KNKELSI >Mature_406_residues SKIINYSEVLESKRLMVGVLSVSFLLSAGNAISGTIPAMEEAFSNISKANIETLTTIPTAGIMLGTVLSGVFSNYLGKKK SVLAGLIIALVGGVIPAFLPQYWPIFISRFLFGVGMGIFNPLSVSYITDLYVGDRQRSLLGYRNAVSNLGDTIMLFVAGI LITFGWNITYLVFFALLIPIVLIILFVPKEFDNFDIRNSALDENGQISDSVSDVKPSTNLKVIEVGVVFMVITMLYNAIP LKFASYIVTEHIGTASTATWIFSFLVLAGIFSGVLFEKISKVFKRLTVFVFEIVIGVAYITIAFTYNIPLLTALVLISGF GWGIINPALTARLVDVSPINSMNLSTSIIVIFISVGSLISPYFFAMFAGLFGNDSAAFAIVVGGALYVVMAVLDFIKIKK NKELSI
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44136; Mature: 44005
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIINYSEVLESKRLMVGVLSVSFLLSAGNAISGTIPAMEEAFSNISKANIETLTTIPT CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCH AGIMLGTVLSGVFSNYLGKKKSVLAGLIIALVGGVIPAFLPQYWPIFISRFLFGVGMGIF HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NPLSVSYITDLYVGDRQRSLLGYRNAVSNLGDTIMLFVAGILITFGWNITYLVFFALLIP CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH IVLIILFVPKEFDNFDIRNSALDENGQISDSVSDVKPSTNLKVIEVGVVFMVITMLYNAI HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEHHHHHHHHHHHHHHHH PLKFASYIVTEHIGTASTATWIFSFLVLAGIFSGVLFEKISKVFKRLTVFVFEIVIGVAY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITIAFTYNIPLLTALVLISGFGWGIINPALTARLVDVSPINSMNLSTSIIVIFISVGSLI HHHHHHCCHHHHHHHHHHHCCCCHHCCHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHH SPYFFAMFAGLFGNDSAAFAIVVGGALYVVMAVLDFIKIKKNKELSI HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SKIINYSEVLESKRLMVGVLSVSFLLSAGNAISGTIPAMEEAFSNISKANIETLTTIPT CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCH AGIMLGTVLSGVFSNYLGKKKSVLAGLIIALVGGVIPAFLPQYWPIFISRFLFGVGMGIF HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NPLSVSYITDLYVGDRQRSLLGYRNAVSNLGDTIMLFVAGILITFGWNITYLVFFALLIP CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH IVLIILFVPKEFDNFDIRNSALDENGQISDSVSDVKPSTNLKVIEVGVVFMVITMLYNAI HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEHHHHHHHHHHHHHHHH PLKFASYIVTEHIGTASTATWIFSFLVLAGIFSGVLFEKISKVFKRLTVFVFEIVIGVAY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITIAFTYNIPLLTALVLISGFGWGIINPALTARLVDVSPINSMNLSTSIIVIFISVGSLI HHHHHHCCHHHHHHHHHHHCCCCHHCCHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHH SPYFFAMFAGLFGNDSAAFAIVVGGALYVVMAVLDFIKIKKNKELSI HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA