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The map label for this gene is araQ [H]

Identifier: 213691258

GI number: 213691258

Start: 396080

End: 397057

Strand: Direct

Name: araQ [H]

Synonym: Blon_0342

Alternate gene names: 213691258

Gene position: 396080-397057 (Clockwise)

Preceding gene: 213691257

Following gene: 213691259

Centisome position: 13.98

GC content: 55.21

Gene sequence:

>978_bases
ATGAGTGAAGCAATCGCAAGACCGCGTTCCAAGTCGCTGCAGCGCAGAGACGCCAAACTGGCGCTCAAGGCAAGCAAGCA
TTACAAGCGCATGCAGCAGCGTGAGCCGGCTCCGAAGCTGACCGGCAAGCAGCGTGTGCTCAACTGGCTGCTGCACATCA
TTATGGCTGTGATGGTCATCTACTGCCTCGTGCCGCTGCTGTGGGTCGTCTTCTCTTCCACAAAGACCAGTGAGGGCATC
TTCAGCTCTTTCGGCCTGTGGTTCGATGACAAGAATGTGTTCTGGCAGAACGTGCAGGATACGTTTGCTTATCAGCATGG
TGTCTACACTCGTTGGCTGTTCAATACGATCATGTACGCAGTGGTAGCAGGTGTTGGTGCAACCATCATTGCCACTTTCG
CTGGGTATGCCATCGCCACCATGCGATTCCCTGGACGTAACGCCCTGCTGGCCGTCACTCTGGCATTCATGTCAATTCCT
TCTACGGTGATCACCGTGCCGCTGTTCCTCATGTATTCGAAGATCGGGCTGGTCGGCACTCCGTGGGCCGTGATTATTCC
GCAGCTTGCCACGCCGTTCGGCCTGTATCTGATGATCATCTATGCGCAGACCTCGATTCCGGTCTCGCTGATCGAAGCCG
CGAAACTGGACGGTGCAAACACTTGGACCATCTTCTGGAAGGTCGGTTTCCCGCTGCTGTCTCCAGGTTTCGTCACCGTA
CTGCTGTTCACGCTGGTCGGTGTTTGGAACAACTACTTCCTGCCGCTGATCATGCTTACGAATACCAACGACTACCCGTT
GACGGTCGGTCTGAACATGTGGCTGAAGATGGGTGCCCAGGGAACTTCAGACGGTCAGGTTCCGAACAACCTCATCATCA
CGGGCTCGCTTATCGCAGTTGTTCCGTTGATCATCGCATTCATGTTCCTGCAAAAGTACTGGCAGTCTGGCCTCGCGGCC
GGCTCTGTCAAGCAGTGA

Upstream 100 bases:

>100_bases
ACGTCAACTATGCCGCTGCCGTCTCTCTGGTCATCGGCATCATCGTCATGGCCTTGGTCGCCGTCGTTAAGATCATCGGC
AACAAGTGGGAGAACAAGTG

Downstream 100 bases:

>100_bases
ACCCTTGGCCGCACGGTCCCTACGATCACACATTCGTTGCCTTGGCGACCGTGCGGCATCCATCTGTTTGAAAAAACAAC
AAGATAGTAATTCATGACAC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MSEAIARPRSKSLQRRDAKLALKASKHYKRMQQREPAPKLTGKQRVLNWLLHIIMAVMVIYCLVPLLWVVFSSTKTSEGI
FSSFGLWFDDKNVFWQNVQDTFAYQHGVYTRWLFNTIMYAVVAGVGATIIATFAGYAIATMRFPGRNALLAVTLAFMSIP
STVITVPLFLMYSKIGLVGTPWAVIIPQLATPFGLYLMIIYAQTSIPVSLIEAAKLDGANTWTIFWKVGFPLLSPGFVTV
LLFTLVGVWNNYFLPLIMLTNTNDYPLTVGLNMWLKMGAQGTSDGQVPNNLIITGSLIAVVPLIIAFMFLQKYWQSGLAA
GSVKQ

Sequences:

>Translated_325_residues
MSEAIARPRSKSLQRRDAKLALKASKHYKRMQQREPAPKLTGKQRVLNWLLHIIMAVMVIYCLVPLLWVVFSSTKTSEGI
FSSFGLWFDDKNVFWQNVQDTFAYQHGVYTRWLFNTIMYAVVAGVGATIIATFAGYAIATMRFPGRNALLAVTLAFMSIP
STVITVPLFLMYSKIGLVGTPWAVIIPQLATPFGLYLMIIYAQTSIPVSLIEAAKLDGANTWTIFWKVGFPLLSPGFVTV
LLFTLVGVWNNYFLPLIMLTNTNDYPLTVGLNMWLKMGAQGTSDGQVPNNLIITGSLIAVVPLIIAFMFLQKYWQSGLAA
GSVKQ
>Mature_324_residues
SEAIARPRSKSLQRRDAKLALKASKHYKRMQQREPAPKLTGKQRVLNWLLHIIMAVMVIYCLVPLLWVVFSSTKTSEGIF
SSFGLWFDDKNVFWQNVQDTFAYQHGVYTRWLFNTIMYAVVAGVGATIIATFAGYAIATMRFPGRNALLAVTLAFMSIPS
TVITVPLFLMYSKIGLVGTPWAVIIPQLATPFGLYLMIIYAQTSIPVSLIEAAKLDGANTWTIFWKVGFPLLSPGFVTVL
LFTLVGVWNNYFLPLIMLTNTNDYPLTVGLNMWLKMGAQGTSDGQVPNNLIITGSLIAVVPLIIAFMFLQKYWQSGLAAG
SVKQ

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=196, Percent_Identity=27.5510204081633, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790464, Length=225, Percent_Identity=29.3333333333333, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789860, Length=208, Percent_Identity=23.0769230769231, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36191; Mature: 36060

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAIARPRSKSLQRRDAKLALKASKHYKRMQQREPAPKLTGKQRVLNWLLHIIMAVMVI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
YCLVPLLWVVFSSTKTSEGIFSSFGLWFDDKNVFWQNVQDTFAYQHGVYTRWLFNTIMYA
HHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VVAGVGATIIATFAGYAIATMRFPGRNALLAVTLAFMSIPSTVITVPLFLMYSKIGLVGT
HHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
PWAVIIPQLATPFGLYLMIIYAQTSIPVSLIEAAKLDGANTWTIFWKVGFPLLSPGFVTV
CHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHH
LLFTLVGVWNNYFLPLIMLTNTNDYPLTVGLNMWLKMGAQGTSDGQVPNNLIITGSLIAV
HHHHHHHHHCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCCCCCCCCCEEEECHHHHH
VPLIIAFMFLQKYWQSGLAAGSVKQ
HHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SEAIARPRSKSLQRRDAKLALKASKHYKRMQQREPAPKLTGKQRVLNWLLHIIMAVMVI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
YCLVPLLWVVFSSTKTSEGIFSSFGLWFDDKNVFWQNVQDTFAYQHGVYTRWLFNTIMYA
HHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VVAGVGATIIATFAGYAIATMRFPGRNALLAVTLAFMSIPSTVITVPLFLMYSKIGLVGT
HHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
PWAVIIPQLATPFGLYLMIIYAQTSIPVSLIEAAKLDGANTWTIFWKVGFPLLSPGFVTV
CHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHH
LLFTLVGVWNNYFLPLIMLTNTNDYPLTVGLNMWLKMGAQGTSDGQVPNNLIITGSLIAV
HHHHHHHHHCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCCCCCCCCCEEEECHHHHH
VPLIIAFMFLQKYWQSGLAAGSVKQ
HHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]