| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691189
Identifier: 213691189
GI number: 213691189
Start: 320267
End: 321625
Strand: Reverse
Name: 213691189
Synonym: Blon_0270
Alternate gene names: NA
Gene position: 321625-320267 (Counterclockwise)
Preceding gene: 213691193
Following gene: 213691188
Centisome position: 11.35
GC content: 67.48
Gene sequence:
>1359_bases ATGGCCGGCGATGTGGCCGGGAACGACAATGGTGCCGTGACGGATTCGCGGTCCCTGGTGGACTCGCTGGTCGCGTCGGG AGCGCTGGACCCCCTGTTCGAACGGATAGACGGCGGGCAGATCGAGCTCACCGGCGACGGCGGACTACCGGGCGAGCTCA CGAGGGCCGCCCTGGAACGCGGCCTGCAGACGGAGATGACGTCGCACCTGGGCTACGCGCCCGGCGACAGGGAGTCGAAG GCGGGCGGCGGGCATGCGAACTCGCGCAACGGCTCGTATCCCAAGACGCCGTCCACGCCGGTGGGAGAGGCGGCCGTGCA GGTTCCCCGCGACAGGGACGGCTCGTTCACCCCGAGGTTGGCGCCCAAGCATTCCAGGAGGCTGGGCGGACTGGACGAGA TGATCATATCCCTGTACGCGGGCGGCATGACGGTGCGCGACATCCAGCACCACCTCGCCAAGACGATCGGCACGGACCTG AGCCCCGAGACGATATCCAACATCACCGACGCGGTGAGCGACGCCGTGCTCGAATGGCAGGAGCGGCCGCTGGACGAGTC CTATCCGGTCGTGTACCTGGACGCCGTCAGGGTCAAGGTGCGCGACAACGGCAGAGTGCTGCCCAAGGCGGCGCACATCG CCATCGGCGTCGACATGGACGGGTTCAAGCATGTGCCTGGCATGTGGGTCCAGGACAACGAGGGCGCCTCCTTCCGGGCG CACGTGTGCGCCGAGATGGCCAACCGGGGCATGGCCGACGCGCTGATCGTGTGCTGCGACGGGCTCAAGGGCCTGCCCGA GGCCGTGGAGGCCACGTGGCCCAAGGCGATCGCGCGGACCTGCGTGGCGCACCCGATACGCGCGGCCAACAGGTTCGTCG CCGACCACGACAGGAAGAGGGTGTGCGCGGCGCTCAGGAGCGTGTACCGCGCGCCCAACGGGCAGGCCGCGGAAAAGGCG CTCGGCGAGTTCGCGGAAAGCGAGCTCGGCCGGAGATACCCGTCGGTGGCCGCCACGTGGAAACGCTCGTGGGACCGGTT CGTCCCGTTCCCGCGGTTCCCGCCCATGCTCCGCCGGGTGGCGTACACCACCAACAGCATCGAATCGCCCGACTACCAGT CGCGCAAGGTCAGCCGCAACCGCAGCCAGTTCCCCAACGACCAGGCCGTGGTCAAGCTGTTCTGGCTGGCAATCTGCGAC ATCGAGGACAAACGCAGCCTCAAACGCGCCAAAGACGGCAACAAAACCAGGCGCAAAAGCGAGGGAAGGCTCATCGAGGG GCGCATGACGACCAACTGGAAACAGGCCCTCGCCCAACTCGCGGCCGCATACCCCGAACGAATGGAACCTTATTTATAA
Upstream 100 bases:
>100_bases AAAAACGCCGGCCGGTCATTCTGAGAGGGTGTCTAATTGTTTGTGTATGGGATCATCTGATGGAAAGGAAACGATCATGG TGACCGAGGCAGTGAAGCCT
Downstream 100 bases:
>100_bases AACACACCCCAAACACAAATAACTTGACAAGCTCCGTCGACAGGGTCAGAAAGGCCGAGGGCGGGCACAACGCGCTGCTC AAACGCACGAAATACCTGTG
Product: transposase, mutator type
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 452; Mature: 451
Protein sequence:
>452_residues MAGDVAGNDNGAVTDSRSLVDSLVASGALDPLFERIDGGQIELTGDGGLPGELTRAALERGLQTEMTSHLGYAPGDRESK AGGGHANSRNGSYPKTPSTPVGEAAVQVPRDRDGSFTPRLAPKHSRRLGGLDEMIISLYAGGMTVRDIQHHLAKTIGTDL SPETISNITDAVSDAVLEWQERPLDESYPVVYLDAVRVKVRDNGRVLPKAAHIAIGVDMDGFKHVPGMWVQDNEGASFRA HVCAEMANRGMADALIVCCDGLKGLPEAVEATWPKAIARTCVAHPIRAANRFVADHDRKRVCAALRSVYRAPNGQAAEKA LGEFAESELGRRYPSVAATWKRSWDRFVPFPRFPPMLRRVAYTTNSIESPDYQSRKVSRNRSQFPNDQAVVKLFWLAICD IEDKRSLKRAKDGNKTRRKSEGRLIEGRMTTNWKQALAQLAAAYPERMEPYL
Sequences:
>Translated_452_residues MAGDVAGNDNGAVTDSRSLVDSLVASGALDPLFERIDGGQIELTGDGGLPGELTRAALERGLQTEMTSHLGYAPGDRESK AGGGHANSRNGSYPKTPSTPVGEAAVQVPRDRDGSFTPRLAPKHSRRLGGLDEMIISLYAGGMTVRDIQHHLAKTIGTDL SPETISNITDAVSDAVLEWQERPLDESYPVVYLDAVRVKVRDNGRVLPKAAHIAIGVDMDGFKHVPGMWVQDNEGASFRA HVCAEMANRGMADALIVCCDGLKGLPEAVEATWPKAIARTCVAHPIRAANRFVADHDRKRVCAALRSVYRAPNGQAAEKA LGEFAESELGRRYPSVAATWKRSWDRFVPFPRFPPMLRRVAYTTNSIESPDYQSRKVSRNRSQFPNDQAVVKLFWLAICD IEDKRSLKRAKDGNKTRRKSEGRLIEGRMTTNWKQALAQLAAAYPERMEPYL >Mature_451_residues AGDVAGNDNGAVTDSRSLVDSLVASGALDPLFERIDGGQIELTGDGGLPGELTRAALERGLQTEMTSHLGYAPGDRESKA GGGHANSRNGSYPKTPSTPVGEAAVQVPRDRDGSFTPRLAPKHSRRLGGLDEMIISLYAGGMTVRDIQHHLAKTIGTDLS PETISNITDAVSDAVLEWQERPLDESYPVVYLDAVRVKVRDNGRVLPKAAHIAIGVDMDGFKHVPGMWVQDNEGASFRAH VCAEMANRGMADALIVCCDGLKGLPEAVEATWPKAIARTCVAHPIRAANRFVADHDRKRVCAALRSVYRAPNGQAAEKAL GEFAESELGRRYPSVAATWKRSWDRFVPFPRFPPMLRRVAYTTNSIESPDYQSRKVSRNRSQFPNDQAVVKLFWLAICDI EDKRSLKRAKDGNKTRRKSEGRLIEGRMTTNWKQALAQLAAAYPERMEPYL
Specific function: Required for the transposition of the insertion element [H]
COG id: COG3328
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 49529; Mature: 49397
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: PS01007 TRANSPOSASE_MUTATOR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGDVAGNDNGAVTDSRSLVDSLVASGALDPLFERIDGGQIELTGDGGLPGELTRAALER CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH GLQTEMTSHLGYAPGDRESKAGGGHANSRNGSYPKTPSTPVGEAAVQVPRDRDGSFTPRL CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC APKHSRRLGGLDEMIISLYAGGMTVRDIQHHLAKTIGTDLSPETISNITDAVSDAVLEWQ CCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH ERPLDESYPVVYLDAVRVKVRDNGRVLPKAAHIAIGVDMDGFKHVPGMWVQDNEGASFRA HCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCHHH HVCAEMANRGMADALIVCCDGLKGLPEAVEATWPKAIARTCVAHPIRAANRFVADHDRKR HHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VCAALRSVYRAPNGQAAEKALGEFAESELGRRYPSVAATWKRSWDRFVPFPRFPPMLRRV HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHH AYTTNSIESPDYQSRKVSRNRSQFPNDQAVVKLFWLAICDIEDKRSLKRAKDGNKTRRKS HHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHC EGRLIEGRMTTNWKQALAQLAAAYPERMEPYL CCCEEECCCCCCHHHHHHHHHHHCHHHCCCCC >Mature Secondary Structure AGDVAGNDNGAVTDSRSLVDSLVASGALDPLFERIDGGQIELTGDGGLPGELTRAALER CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH GLQTEMTSHLGYAPGDRESKAGGGHANSRNGSYPKTPSTPVGEAAVQVPRDRDGSFTPRL CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC APKHSRRLGGLDEMIISLYAGGMTVRDIQHHLAKTIGTDLSPETISNITDAVSDAVLEWQ CCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH ERPLDESYPVVYLDAVRVKVRDNGRVLPKAAHIAIGVDMDGFKHVPGMWVQDNEGASFRA HCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCHHH HVCAEMANRGMADALIVCCDGLKGLPEAVEATWPKAIARTCVAHPIRAANRFVADHDRKR HHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VCAALRSVYRAPNGQAAEKALGEFAESELGRRYPSVAATWKRSWDRFVPFPRFPPMLRRV HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHH AYTTNSIESPDYQSRKVSRNRSQFPNDQAVVKLFWLAICDIEDKRSLKRAKDGNKTRRKS HHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHC EGRLIEGRMTTNWKQALAQLAAAYPERMEPYL CCCEEECCCCCCHHHHHHHHHHHCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA