Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 213691153

GI number: 213691153

Start: 278755

End: 279591

Strand: Direct

Name: yggS [C]

Synonym: Blon_0232

Alternate gene names: 213691153

Gene position: 278755-279591 (Clockwise)

Preceding gene: 213691152

Following gene: 213691155

Centisome position: 9.84

GC content: 65.35

Gene sequence:

>837_bases
ATGACGGCATACATGGAGCATAAGGACCTGACGAACGAGGTCATCGAGCGCGGGCGCACGAATGAGATCGCCGATGGCGT
GCATCGGGTGCTCGACCGTATCGCCGAGGCTGAGGCCGTCGCCGGTCGCAGGAGCGGGTCGGTGCGGCTGCTGGCCGCCA
CCAAGACCCGTGACGTGGGTGAGATCCTGGCCGCGATCGACGCCGGTGTGCGCTGCATCGGCGAGAACCGTCCCCAGGAG
GTCACCGTCAAGGCCCCGGGCCTGGCGAAGCGCCTGGCCGAACGAGGGTATGCGCTGGGCGTGGTCCGCGACGCCGCTTC
GGGCGATGATGCCTTGGCCGGGGCCGGACGGCATGTCCCGTTCCATCTCATCGGCCAGTTGCAAGCCAATAAAATCGGCA
AGGTGTTGCCGGCGGTGGACACCATCGAATCCGTGGATTCCATCGAACTGGCGGAGAAGATCGCCCGCCGCGCCACCATG
CGCGGCATCACGGTCGGCGTGTTGCTGGAGGTGAACGAATCCGGCGAGGAATCGAAGTCCGGCTGCGCACCCAGCCACGC
CATCGACTTGGCTCAGCGCATCGGTGCGATGGGCGGACTGCGCTTGCAGGGTCTGATGACTATTGGTGCCCATGTGGATG
ATGAGCGCACGATTCGTGCGGGCTTCGCGCATCTGCGCCGCACTCGTGACCAGATTCTTGCCTCCGGTGCCGAAGGCACG
GCCGACTGCACCGAACTGTCAATGGGCATGACCCATGACATGGCCTACGCCATCGAAGAAGGCTCCACCATCGTGCGCGT
CGGCACCGCCATCTTCGGCGAGCGCGCTTTCATCTGA

Upstream 100 bases:

>100_bases
ATCTACTTAAAGGGCCGCAAGACCAGGAAGCGATGAGGCGCCGGCGCAACGCCTTCCCGTATGGGTATGATGGAATGTCG
ATTCACCGGGGAGAACAGCA

Downstream 100 bases:

>100_bases
TTGGAGCTATACGGAAAAACGCCGCTTGATCAATAGCCAAGCGGCGTCTTTTCGTAAGGATTTTCGGCGTATCAATCACG
CATAGATATTGCGCGGACGC

Product: alanine racemase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTAYMEHKDLTNEVIERGRTNEIADGVHRVLDRIAEAEAVAGRRSGSVRLLAATKTRDVGEILAAIDAGVRCIGENRPQE
VTVKAPGLAKRLAERGYALGVVRDAASGDDALAGAGRHVPFHLIGQLQANKIGKVLPAVDTIESVDSIELAEKIARRATM
RGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGT
ADCTELSMGMTHDMAYAIEEGSTIVRVGTAIFGERAFI

Sequences:

>Translated_278_residues
MTAYMEHKDLTNEVIERGRTNEIADGVHRVLDRIAEAEAVAGRRSGSVRLLAATKTRDVGEILAAIDAGVRCIGENRPQE
VTVKAPGLAKRLAERGYALGVVRDAASGDDALAGAGRHVPFHLIGQLQANKIGKVLPAVDTIESVDSIELAEKIARRATM
RGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGT
ADCTELSMGMTHDMAYAIEEGSTIVRVGTAIFGERAFI
>Mature_277_residues
TAYMEHKDLTNEVIERGRTNEIADGVHRVLDRIAEAEAVAGRRSGSVRLLAATKTRDVGEILAAIDAGVRCIGENRPQEV
TVKAPGLAKRLAERGYALGVVRDAASGDDALAGAGRHVPFHLIGQLQANKIGKVLPAVDTIESVDSIELAEKIARRATMR
GITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTA
DCTELSMGMTHDMAYAIEEGSTIVRVGTAIFGERAFI

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=256, Percent_Identity=32.421875, Blast_Score=115, Evalue=6e-26,
Organism=Escherichia coli, GI1789321, Length=264, Percent_Identity=32.1969696969697, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=262, Percent_Identity=30.1526717557252, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI45550861, Length=265, Percent_Identity=33.2075471698113, Blast_Score=108, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 29527; Mature: 29396

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAYMEHKDLTNEVIERGRTNEIADGVHRVLDRIAEAEAVAGRRSGSVRLLAATKTRDVG
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
EILAAIDAGVRCIGENRPQEVTVKAPGLAKRLAERGYALGVVRDAASGDDALAGAGRHVP
HHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCHHCCCCCCCC
FHLIGQLQANKIGKVLPAVDTIESVDSIELAEKIARRATMRGITVGVLLEVNESGEESKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC
GCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGT
CCCCHHHHHHHHHHHHCCCCEEEHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
ADCTELSMGMTHDMAYAIEEGSTIVRVGTAIFGERAFI
CHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCC
>Mature Secondary Structure 
TAYMEHKDLTNEVIERGRTNEIADGVHRVLDRIAEAEAVAGRRSGSVRLLAATKTRDVG
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
EILAAIDAGVRCIGENRPQEVTVKAPGLAKRLAERGYALGVVRDAASGDDALAGAGRHVP
HHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCHHCCCCCCCC
FHLIGQLQANKIGKVLPAVDTIESVDSIELAEKIARRATMRGITVGVLLEVNESGEESKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC
GCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGT
CCCCHHHHHHHHHHHHCCCCEEEHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
ADCTELSMGMTHDMAYAIEEGSTIVRVGTAIFGERAFI
CHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]