| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is cpx [H]
Identifier: 213691066
GI number: 213691066
Start: 173869
End: 175221
Strand: Direct
Name: cpx [H]
Synonym: Blon_0145
Alternate gene names: 213691066
Gene position: 173869-175221 (Clockwise)
Preceding gene: 213691065
Following gene: 213691067
Centisome position: 6.14
GC content: 60.09
Gene sequence:
>1353_bases ATGTCAATACGCAAGGAGCTGACCGCCCAGAACGTACTGCTGGGTTTCCAGCATGTGTTCGTTTCCAATGTTTGGCTTGA TCCGGTATTCGTGGCCGGAGCAATCGGCTTACCTATTGCCCTGTCGTCGAACATGATTAACGCCATCTTCATCGTCTCCG GCCTGGTTACTCTGATCCAGGCCACTCGGCTGGTTCGCCTGCCGGTGGTGCAGGGGCCGTCAGCCGCGTTTGACGCGTTG ATGATCGCGGCAGGTACGGCTGGCATGCTGGGGGCGGCGAGTTCGTCCATTCTCATCGCTTCGCTTGTGTTCCTGTTGCT GTGCCTGACCGGTGTGATAGAGCGGATGAGGTTCCTGTTCTCTCCGATGATCTCGGGCGTGGTCATCTTTATGGTCGGTG TTTCGCTGTCCGGATTCACGCTGAGCGAGTTTCTTGGTGGGGCTCCCGGCGACAAAACGTTTGCCGATCCGCACATCCTG ACCGTGTCGATCCTGACCACGGCGATTGTGCTTGTCCTGTCGCTGCTCGGCAAGGGTCTGCTTAAGTCGTTCTCATTCCT CATCGCGCTTGTCGTCGGCACCGTGGTCGCCGCGGCGTTTGGCATGGTGGACTTCTCTCCTGTGGCTTCCAAGGGATGGT TGGGCCTGCCGACCTTCATGCCTTACGGGCCGTTTACGTTTGACTGGAAGATCTTCATTCCGTTCTTCATCGCCTATATG GTTGCCGTCATGGAGGCTCTCGGCGTCTATCAGGCGGCTTCCGAGATTCAAGGCACGACCCTCGAACGCAAGCAGGTGCG CTACGGCCTCGCCGGCGAGGCGGCAGGTTCGGCCATTTCCTCGTTGATTGGTGGATTCACCACCACCGCATACCCGCAAA ATGTCGGCCTGCTCAACCTGACCGGCGAAGGCAAGCTGCGCACGCGCACGCCTGTGATCATCGCCGCCATCCTGTTGCTG ATTCTGGGCTTCGTGCCAAAGGCAGGCGCGCTGCTGTCCGTCATTCCCTCGGCAGTCGTCGGAGGCATCTTCCTGCCGGC TGCGGCCAGCCTGATCGTGACCGGTCTGCGAGCCTTGCGCAAGGTCGCTGATGACGAGCGCCGTCAAACGGTCATCGGCA TGTCTCTGCTGCTCGGCATCGCCCTGCCCAAGGCGCTCTCCGGCCTGACCGGCGGCGCAAGCGTGTTCTTTGGCAACAAC ATCATGGTCGGTGTATTCAGCGCCATCATTCTCAATGCGCTGTTCATCGCTCTTCCGGATTTGGTGGCGAAGCATCGTGC GCCGGCGTCCATGGATGTTCCAGCAGCCGATTCGGCGGATGGGACTGGCGCCGCGGCGCACGATGAACGATAA
Upstream 100 bases:
>100_bases CCCTTCGAACCTGTGAGCTAACACTCGCGTAGGGAATACGACGGTTGAACTCCTCTGTTCGGCTCGGCATCCCATATGCG CGTTGAGAGAGAGGAAGCGT
Downstream 100 bases:
>100_bases TGCTGGTTGATATTGGATATTGACAGGAGCGATGCAATGACTGATGTGATGGATGACGCGCGTCGTATCAAGCGCGGGAT TCTGGATTTTATCCATACCT
Product: Xanthine/uracil/vitamin C permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 450; Mature: 449
Protein sequence:
>450_residues MSIRKELTAQNVLLGFQHVFVSNVWLDPVFVAGAIGLPIALSSNMINAIFIVSGLVTLIQATRLVRLPVVQGPSAAFDAL MIAAGTAGMLGAASSSILIASLVFLLLCLTGVIERMRFLFSPMISGVVIFMVGVSLSGFTLSEFLGGAPGDKTFADPHIL TVSILTTAIVLVLSLLGKGLLKSFSFLIALVVGTVVAAAFGMVDFSPVASKGWLGLPTFMPYGPFTFDWKIFIPFFIAYM VAVMEALGVYQAASEIQGTTLERKQVRYGLAGEAAGSAISSLIGGFTTTAYPQNVGLLNLTGEGKLRTRTPVIIAAILLL ILGFVPKAGALLSVIPSAVVGGIFLPAAASLIVTGLRALRKVADDERRQTVIGMSLLLGIALPKALSGLTGGASVFFGNN IMVGVFSAIILNALFIALPDLVAKHRAPASMDVPAADSADGTGAAAHDER
Sequences:
>Translated_450_residues MSIRKELTAQNVLLGFQHVFVSNVWLDPVFVAGAIGLPIALSSNMINAIFIVSGLVTLIQATRLVRLPVVQGPSAAFDAL MIAAGTAGMLGAASSSILIASLVFLLLCLTGVIERMRFLFSPMISGVVIFMVGVSLSGFTLSEFLGGAPGDKTFADPHIL TVSILTTAIVLVLSLLGKGLLKSFSFLIALVVGTVVAAAFGMVDFSPVASKGWLGLPTFMPYGPFTFDWKIFIPFFIAYM VAVMEALGVYQAASEIQGTTLERKQVRYGLAGEAAGSAISSLIGGFTTTAYPQNVGLLNLTGEGKLRTRTPVIIAAILLL ILGFVPKAGALLSVIPSAVVGGIFLPAAASLIVTGLRALRKVADDERRQTVIGMSLLLGIALPKALSGLTGGASVFFGNN IMVGVFSAIILNALFIALPDLVAKHRAPASMDVPAADSADGTGAAAHDER >Mature_449_residues SIRKELTAQNVLLGFQHVFVSNVWLDPVFVAGAIGLPIALSSNMINAIFIVSGLVTLIQATRLVRLPVVQGPSAAFDALM IAAGTAGMLGAASSSILIASLVFLLLCLTGVIERMRFLFSPMISGVVIFMVGVSLSGFTLSEFLGGAPGDKTFADPHILT VSILTTAIVLVLSLLGKGLLKSFSFLIALVVGTVVAAAFGMVDFSPVASKGWLGLPTFMPYGPFTFDWKIFIPFFIAYMV AVMEALGVYQAASEIQGTTLERKQVRYGLAGEAAGSAISSLIGGFTTTAYPQNVGLLNLTGEGKLRTRTPVIIAAILLLI LGFVPKAGALLSVIPSAVVGGIFLPAAASLIVTGLRALRKVADDERRQTVIGMSLLLGIALPKALSGLTGGASVFFGNNI MVGVFSAIILNALFIALPDLVAKHRAPASMDVPAADSADGTGAAAHDER
Specific function: Unknown
COG id: COG2233
COG function: function code F; Xanthine/uracil permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily [H]
Homologues:
Organism=Escherichia coli, GI87082181, Length=424, Percent_Identity=27.5943396226415, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1790087, Length=408, Percent_Identity=26.2254901960784, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI87082178, Length=405, Percent_Identity=27.6543209876543, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1788843, Length=287, Percent_Identity=27.8745644599303, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87081818, Length=397, Percent_Identity=26.448362720403, Blast_Score=82, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17558856, Length=227, Percent_Identity=27.3127753303965, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71993493, Length=422, Percent_Identity=22.0379146919431, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17542262, Length=389, Percent_Identity=21.3367609254499, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21356175, Length=471, Percent_Identity=23.1422505307856, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017588 - InterPro: IPR006042 - InterPro: IPR006043 [H]
Pfam domain/function: PF00860 Xan_ur_permease [H]
EC number: NA
Molecular weight: Translated: 46724; Mature: 46593
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIRKELTAQNVLLGFQHVFVSNVWLDPVFVAGAIGLPIALSSNMINAIFIVSGLVTLIQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHH ATRLVRLPVVQGPSAAFDALMIAAGTAGMLGAASSSILIASLVFLLLCLTGVIERMRFLF HHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SPMISGVVIFMVGVSLSGFTLSEFLGGAPGDKTFADPHILTVSILTTAIVLVLSLLGKGL HHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LKSFSFLIALVVGTVVAAAFGMVDFSPVASKGWLGLPTFMPYGPFTFDWKIFIPFFIAYM HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHH VAVMEALGVYQAASEIQGTTLERKQVRYGLAGEAAGSAISSLIGGFTTTAYPQNVGLLNL HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEE TGEGKLRTRTPVIIAAILLLILGFVPKAGALLSVIPSAVVGGIFLPAAASLIVTGLRALR CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KVADDERRQTVIGMSLLLGIALPKALSGLTGGASVFFGNNIMVGVFSAIILNALFIALPD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH LVAKHRAPASMDVPAADSADGTGAAAHDER HHHHCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SIRKELTAQNVLLGFQHVFVSNVWLDPVFVAGAIGLPIALSSNMINAIFIVSGLVTLIQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHH ATRLVRLPVVQGPSAAFDALMIAAGTAGMLGAASSSILIASLVFLLLCLTGVIERMRFLF HHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SPMISGVVIFMVGVSLSGFTLSEFLGGAPGDKTFADPHILTVSILTTAIVLVLSLLGKGL HHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LKSFSFLIALVVGTVVAAAFGMVDFSPVASKGWLGLPTFMPYGPFTFDWKIFIPFFIAYM HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHH VAVMEALGVYQAASEIQGTTLERKQVRYGLAGEAAGSAISSLIGGFTTTAYPQNVGLLNL HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEE TGEGKLRTRTPVIIAAILLLILGFVPKAGALLSVIPSAVVGGIFLPAAASLIVTGLRALR CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KVADDERRQTVIGMSLLLGIALPKALSGLTGGASVFFGNNIMVGVFSAIILNALFIALPD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH LVAKHRAPASMDVPAADSADGTGAAAHDER HHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11792842; 8162194 [H]