BacMap

Definition	Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession	NC_011593
Length	2,832,748

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The map label for this gene is cbpA [H]

Identifier: 213691064

GI number: 213691064

Start: 171982

End: 172992

Strand: Direct

Name: cbpA [H]

Synonym: Blon_0143

Alternate gene names: 213691064

Gene position: 171982-172992 (Clockwise)

Preceding gene: 213691063

Following gene: 213691065

Centisome position: 6.07

GC content: 63.2

Gene sequence:

>1011_bases
ATGGCTGAAAACGAATGGCTCAGCAAAGACTTCTACAAAGTCCTTGGTGTCTCCAAGGACGCTTCGGACGACGACATCAA
GAAGGCGTACCGCAAGCTCGCCCGCAAATACCATCCTGACGTCAACAAGACCAAGGAAGCCGAGGAGAAGTTCAAGGACA
TCTCCGAAGCCTATGACGTGCTGAGCAAGAAGGAAGATCGCCAGAAGTACGACGCGATTCGTCAGTTCGGCATGGGCGGC
GCCCGCTTCGCCGGCGGTTCCGGCGCCGGCGGCTTCGATGCTTCCGGTTTCTCCGACATCTTCGGTTCCATGTTCGGCCA
GGGTGCCGGCGGCAATGGCTCGCGCATCCGCTTCTCCACTTCGGGCGGCGGCCCCAACAACATCAACGACATCTTCTCGA
TGTTCGGCGGTGCTGCAGGCCAAGGCGGCTACAGCCAGCAGGCGTACGGCAATGCCGGCGGCTATGGCTATGAGGAGGCC
CCGCGCCCCGAAAACGGCGAGGACCGCAACTCCAAGATCAGCCTGACCCTGCGTCAGGCGGTCAAGGGCGCTACCGTGTC
CCTGTCCGTGGACGGCAAGAAGTTCAAGGCCCACGTGCCTGCGGGCGTCAAGGACGGCCAGAAAATCAAGCTTGCCGGCA
AGGGCAAGCCGGGCATCAATGGCGGCAAGGCAGGTGACCTGTACCTGCACGTCACCGTCAAGCCCGATGCCGCGTTCTCG
ATGCGCGGCCACGACATCGTCATGGACCTGCCCGTCACCGTGGGCCAGGCCGTGGCCGGTGGCAAGGTCGAGACCAAGGA
CATCGACGGCAATCCCGTCACCTTCAAGGTGCCGGCCGGTTCCAGCTCCGGCGCGGAGGTCAAGCTCGCGGGACTCGGTG
TCCAGCGCGGCAACCAGCCGGGCGACCTGATCGGCCGCGTGCAGATCATGGTCCCCGCCAAGCCGGGTCTGGCGGTCAAG
CACGCCGCCAAAGAATTCGACGAAAAAGCCGGCGACTATCTCAGCCTGTAA

Upstream 100 bases:

>100_bases
GCCGCCCGTGTGGTCGTGGCCTCCCCGCAAGACCGATGACATGTTGGCTCCCCTCGATGAGGGGAGCCAACGCGAAGAAC
GTATACGAAAGGAGACATGA

Downstream 100 bases:

>100_bases
TCAGGAGGTGAACAATGGCGCGGTTAGCCAACCAAATGAAGCAGTTGTACGCAATGTGCGCAACCGCGCTGGTGATGGGC
AGGGCCGATCTCGACGGAGC

Product: heat shock protein DnaJ domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MAENEWLSKDFYKVLGVSKDASDDDIKKAYRKLARKYHPDVNKTKEAEEKFKDISEAYDVLSKKEDRQKYDAIRQFGMGG
ARFAGGSGAGGFDASGFSDIFGSMFGQGAGGNGSRIRFSTSGGGPNNINDIFSMFGGAAGQGGYSQQAYGNAGGYGYEEA
PRPENGEDRNSKISLTLRQAVKGATVSLSVDGKKFKAHVPAGVKDGQKIKLAGKGKPGINGGKAGDLYLHVTVKPDAAFS
MRGHDIVMDLPVTVGQAVAGGKVETKDIDGNPVTFKVPAGSSSGAEVKLAGLGVQRGNQPGDLIGRVQIMVPAKPGLAVK
HAAKEFDEKAGDYLSL

Sequences:

>Translated_336_residues
MAENEWLSKDFYKVLGVSKDASDDDIKKAYRKLARKYHPDVNKTKEAEEKFKDISEAYDVLSKKEDRQKYDAIRQFGMGG
ARFAGGSGAGGFDASGFSDIFGSMFGQGAGGNGSRIRFSTSGGGPNNINDIFSMFGGAAGQGGYSQQAYGNAGGYGYEEA
PRPENGEDRNSKISLTLRQAVKGATVSLSVDGKKFKAHVPAGVKDGQKIKLAGKGKPGINGGKAGDLYLHVTVKPDAAFS
MRGHDIVMDLPVTVGQAVAGGKVETKDIDGNPVTFKVPAGSSSGAEVKLAGLGVQRGNQPGDLIGRVQIMVPAKPGLAVK
HAAKEFDEKAGDYLSL
>Mature_335_residues
AENEWLSKDFYKVLGVSKDASDDDIKKAYRKLARKYHPDVNKTKEAEEKFKDISEAYDVLSKKEDRQKYDAIRQFGMGGA
RFAGGSGAGGFDASGFSDIFGSMFGQGAGGNGSRIRFSTSGGGPNNINDIFSMFGGAAGQGGYSQQAYGNAGGYGYEEAP
RPENGEDRNSKISLTLRQAVKGATVSLSVDGKKFKAHVPAGVKDGQKIKLAGKGKPGINGGKAGDLYLHVTVKPDAAFSM
RGHDIVMDLPVTVGQAVAGGKVETKDIDGNPVTFKVPAGSSSGAEVKLAGLGVQRGNQPGDLIGRVQIMVPAKPGLAVKH
AAKEFDEKAGDYLSL

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI5453690, Length=338, Percent_Identity=30.1775147928994, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI205360838, Length=342, Percent_Identity=28.9473684210526, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI201862587, Length=339, Percent_Identity=29.2035398230088, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI205360840, Length=342, Percent_Identity=28.9473684210526, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI6631085, Length=327, Percent_Identity=29.6636085626911, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI201862518, Length=339, Percent_Identity=29.2035398230088, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI56549115, Length=341, Percent_Identity=29.0322580645161, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI7706495, Length=300, Percent_Identity=28.6666666666667, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI194328760, Length=357, Percent_Identity=27.7310924369748, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI194328758, Length=309, Percent_Identity=29.126213592233, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI4504511, Length=300, Percent_Identity=29, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI39204547, Length=312, Percent_Identity=26.9230769230769, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI9558755, Length=120, Percent_Identity=44.1666666666667, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI194306642, Length=107, Percent_Identity=48.5981308411215, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI194306640, Length=107, Percent_Identity=48.5981308411215, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI72534740, Length=159, Percent_Identity=37.7358490566038, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI56687498, Length=110, Percent_Identity=45.4545454545455, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI27151736, Length=107, Percent_Identity=44.8598130841121, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI88501736, Length=107, Percent_Identity=44.8598130841121, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI17388799, Length=64, Percent_Identity=59.375, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI21553335, Length=102, Percent_Identity=44.1176470588235, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI4885495, Length=64, Percent_Identity=59.375, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI23503241, Length=106, Percent_Identity=44.3396226415094, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI21361912, Length=73, Percent_Identity=47.945205479452, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI47777312, Length=98, Percent_Identity=45.9183673469388, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI68077168, Length=114, Percent_Identity=38.5964912280702, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI68077166, Length=114, Percent_Identity=38.5964912280702, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI22749377, Length=64, Percent_Identity=51.5625, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031741, Length=72, Percent_Identity=51.3888888888889, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI45504382, Length=83, Percent_Identity=43.3734939759036, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787235, Length=314, Percent_Identity=33.1210191082803, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1786197, Length=350, Percent_Identity=32.2857142857143, Blast_Score=150, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17553098, Length=351, Percent_Identity=30.7692307692308, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17553096, Length=351, Percent_Identity=30.7692307692308, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17534355, Length=333, Percent_Identity=32.1321321321321, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI212645553, Length=315, Percent_Identity=27.3015873015873, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538236, Length=127, Percent_Identity=40.9448818897638, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17507263, Length=337, Percent_Identity=26.1127596439169, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17554644, Length=106, Percent_Identity=43.3962264150943, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI86562985, Length=95, Percent_Identity=35.7894736842105, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17554874, Length=111, Percent_Identity=36.036036036036, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17554900, Length=68, Percent_Identity=47.0588235294118, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17568643, Length=70, Percent_Identity=50, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115532378, Length=99, Percent_Identity=40.4040404040404, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI86563276, Length=98, Percent_Identity=42.8571428571429, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=302, Percent_Identity=29.4701986754967, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6323813, Length=167, Percent_Identity=41.3173652694611, Blast_Score=80, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6323870, Length=71, Percent_Identity=49.2957746478873, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321094, Length=391, Percent_Identity=25.8312020460358, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6324252, Length=220, Percent_Identity=28.1818181818182, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24658562, Length=336, Percent_Identity=30.3571428571429, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24658555, Length=336, Percent_Identity=30.3571428571429, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI85726398, Length=368, Percent_Identity=28.804347826087, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI45549272, Length=377, Percent_Identity=27.0557029177719, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI45552813, Length=374, Percent_Identity=27.2727272727273, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI45552811, Length=377, Percent_Identity=27.0557029177719, Blast_Score=101, Evalue=8e-22,
Organism=Drosophila melanogaster, GI19920464, Length=324, Percent_Identity=26.2345679012346, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI18858081, Length=333, Percent_Identity=26.7267267267267, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24646562, Length=341, Percent_Identity=27.5659824046921, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24646560, Length=341, Percent_Identity=27.5659824046921, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24646558, Length=341, Percent_Identity=27.5659824046921, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24646556, Length=341, Percent_Identity=27.5659824046921, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI21357547, Length=341, Percent_Identity=27.5659824046921, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI20129487, Length=348, Percent_Identity=27.2988505747126, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24584014, Length=348, Percent_Identity=27.2988505747126, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24668492, Length=65, Percent_Identity=47.6923076923077, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24654066, Length=72, Percent_Identity=50, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24654070, Length=72, Percent_Identity=50, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24654068, Length=72, Percent_Identity=50, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24654072, Length=72, Percent_Identity=50, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI161077138, Length=65, Percent_Identity=53.8461538461538, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641698, Length=109, Percent_Identity=33.0275229357798, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641696, Length=109, Percent_Identity=33.0275229357798, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584630, Length=70, Percent_Identity=48.5714285714286, Blast_Score=68, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17648033, Length=70, Percent_Identity=48.5714285714286, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17737735, Length=69, Percent_Identity=46.3768115942029, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24668523, Length=69, Percent_Identity=46.3768115942029, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574723, Length=83, Percent_Identity=40.9638554216867, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358273, Length=64, Percent_Identity=54.6875, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 35294; Mature: 35163

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENEWLSKDFYKVLGVSKDASDDDIKKAYRKLARKYHPDVNKTKEAEEKFKDISEAYDV
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LSKKEDRQKYDAIRQFGMGGARFAGGSGAGGFDASGFSDIFGSMFGQGAGGNGSRIRFST
HHCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEE
SGGGPNNINDIFSMFGGAAGQGGYSQQAYGNAGGYGYEEAPRPENGEDRNSKISLTLRQA
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHH
VKGATVSLSVDGKKFKAHVPAGVKDGQKIKLAGKGKPGINGGKAGDLYLHVTVKPDAAFS
HCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEE
MRGHDIVMDLPVTVGQAVAGGKVETKDIDGNPVTFKVPAGSSSGAEVKLAGLGVQRGNQP
ECCCEEEEECCCHHCHHHCCCEEEECCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCC
GDLIGRVQIMVPAKPGLAVKHAAKEFDEKAGDYLSL
CCEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AENEWLSKDFYKVLGVSKDASDDDIKKAYRKLARKYHPDVNKTKEAEEKFKDISEAYDV
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LSKKEDRQKYDAIRQFGMGGARFAGGSGAGGFDASGFSDIFGSMFGQGAGGNGSRIRFST
HHCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEE
SGGGPNNINDIFSMFGGAAGQGGYSQQAYGNAGGYGYEEAPRPENGEDRNSKISLTLRQA
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHH
VKGATVSLSVDGKKFKAHVPAGVKDGQKIKLAGKGKPGINGGKAGDLYLHVTVKPDAAFS
HCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEE
MRGHDIVMDLPVTVGQAVAGGKVETKDIDGNPVTFKVPAGSSSGAEVKLAGLGVQRGNQP
ECCCEEEEECCCHHCHHHCCCEEEECCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCC
GDLIGRVQIMVPAKPGLAVKHAAKEFDEKAGDYLSL
CCEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA