| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is ureH [H]
Identifier: 213691036
GI number: 213691036
Start: 135948
End: 136802
Strand: Direct
Name: ureH [H]
Synonym: Blon_0115
Alternate gene names: 213691036
Gene position: 135948-136802 (Clockwise)
Preceding gene: 213691035
Following gene: 213691037
Centisome position: 4.8
GC content: 63.39
Gene sequence:
>855_bases ATGCCGGAAAGCACATTCCGCATGTCCACGGCGTTCCGTCATGGGCGCACCAAAGTGGACGACCTGTATTTCGAGGCGCC ATTCAAGCTGATGACGCCGTTTCATGACGGCGCGCACACGGATTGCATGGTCATGCTCGCATCCCCCGGTTTCCTTGGCG GCGATGTGGCGCATATCGATTGCACGTTCGGAGCCGATACCGATACGACGATGCGCACGCAGAGCTACGAGAAAGTACTC GACACGGCTGACGGCGAGGCGAAACGAACCATCGACCTGACGGTGCTGGACAACGCGAAAGCCGTGTTCCTGCCGTTCCC GGTCATCCCGTTCGCGCACTCGGTGTTCTCGAACGTCACGAACGCCCATATCGGTGCGCAATCGTCATTCATGTATGCGG ATGTGGTCACCTGTGGTCGCGTGGGCATGGGGGAGCGGTGGAAGATGCGGCGGTTCAGCAGCTCCACTCGCGTCTATGTG GACGAGACGAGCGAGGAGGGCGGTCCCCGGTCTCGCCCCCGTGGCGACGGGGAGGAATCCGCCCCGCGTCTGGTCTTCGC CGACCGCCTGCTGCTTGAACCGGACCGCTTCACGTATACGGATACGGCCATGTGGCGGGAGTTCACCCACTGCGGCATGG CCTATCTGCACGTTCCCCGCCGGGAATCAAGGCGGACGCAGATGACGGCGGAGGACGAGCTCGTCGAACGGATTCGTGCA CTGGCGCACGATCGTGGGCCGAGAGGCGAGATCGGCGTGAGCCGCCAGAACGAGGGGATCGCGGTGCGTCTGCTCACCGA CCGTGGGGACGACGCCTTCGGGTTCCTTGCCGAAGTCGCGCAATTGCTGCGGTAG
Upstream 100 bases:
>100_bases ATCGCATGGATCAGGAAATCGGTCTTGTTCGAGGACATGCGGTGACGGCATGAATCACGCCATCGCACGACCACGCACCG CACGACCGTAAGAGGGGCGT
Downstream 100 bases:
>100_bases ATAACCGAACACTCGCGCACGGCGTGTCGACATGCTCCTTGACGAGACCCGGAAACTGGTCGATGACCTCTCCGCCGCAC TGTTGCGCGTCGAACGCATC
Product: Urease accessory protein UreD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MPESTFRMSTAFRHGRTKVDDLYFEAPFKLMTPFHDGAHTDCMVMLASPGFLGGDVAHIDCTFGADTDTTMRTQSYEKVL DTADGEAKRTIDLTVLDNAKAVFLPFPVIPFAHSVFSNVTNAHIGAQSSFMYADVVTCGRVGMGERWKMRRFSSSTRVYV DETSEEGGPRSRPRGDGEESAPRLVFADRLLLEPDRFTYTDTAMWREFTHCGMAYLHVPRRESRRTQMTAEDELVERIRA LAHDRGPRGEIGVSRQNEGIAVRLLTDRGDDAFGFLAEVAQLLR
Sequences:
>Translated_284_residues MPESTFRMSTAFRHGRTKVDDLYFEAPFKLMTPFHDGAHTDCMVMLASPGFLGGDVAHIDCTFGADTDTTMRTQSYEKVL DTADGEAKRTIDLTVLDNAKAVFLPFPVIPFAHSVFSNVTNAHIGAQSSFMYADVVTCGRVGMGERWKMRRFSSSTRVYV DETSEEGGPRSRPRGDGEESAPRLVFADRLLLEPDRFTYTDTAMWREFTHCGMAYLHVPRRESRRTQMTAEDELVERIRA LAHDRGPRGEIGVSRQNEGIAVRLLTDRGDDAFGFLAEVAQLLR >Mature_283_residues PESTFRMSTAFRHGRTKVDDLYFEAPFKLMTPFHDGAHTDCMVMLASPGFLGGDVAHIDCTFGADTDTTMRTQSYEKVLD TADGEAKRTIDLTVLDNAKAVFLPFPVIPFAHSVFSNVTNAHIGAQSSFMYADVVTCGRVGMGERWKMRRFSSSTRVYVD ETSEEGGPRSRPRGDGEESAPRLVFADRLLLEPDRFTYTDTAMWREFTHCGMAYLHVPRRESRRTQMTAEDELVERIRAL AHDRGPRGEIGVSRQNEGIAVRLLTDRGDDAFGFLAEVAQLLR
Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter [H]
COG id: COG0829
COG function: function code O; Urease accessory protein UreH
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ureD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002669 [H]
Pfam domain/function: PF01774 UreD [H]
EC number: NA
Molecular weight: Translated: 31888; Mature: 31757
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPESTFRMSTAFRHGRTKVDDLYFEAPFKLMTPFHDGAHTDCMVMLASPGFLGGDVAHID CCCCHHHHHHHHHCCCCCHHHEEEECCHHEECCCCCCCCCCEEEEEECCCCCCCCEEEEE CTFGADTDTTMRTQSYEKVLDTADGEAKRTIDLTVLDNAKAVFLPFPVIPFAHSVFSNVT EEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHH NAHIGAQSSFMYADVVTCGRVGMGERWKMRRFSSSTRVYVDETSEEGGPRSRPRGDGEES HCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC APRLVFADRLLLEPDRFTYTDTAMWREFTHCGMAYLHVPRRESRRTQMTAEDELVERIRA CCEEEEEHHHEECCCCCEECHHHHHHHHHHCCEEEEECCCHHHHHHCCCHHHHHHHHHHH LAHDRGPRGEIGVSRQNEGIAVRLLTDRGDDAFGFLAEVAQLLR HHHCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC >Mature Secondary Structure PESTFRMSTAFRHGRTKVDDLYFEAPFKLMTPFHDGAHTDCMVMLASPGFLGGDVAHID CCCHHHHHHHHHCCCCCHHHEEEECCHHEECCCCCCCCCCEEEEEECCCCCCCCEEEEE CTFGADTDTTMRTQSYEKVLDTADGEAKRTIDLTVLDNAKAVFLPFPVIPFAHSVFSNVT EEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHH NAHIGAQSSFMYADVVTCGRVGMGERWKMRRFSSSTRVYVDETSEEGGPRSRPRGDGEES HCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC APRLVFADRLLLEPDRFTYTDTAMWREFTHCGMAYLHVPRRESRRTQMTAEDELVERIRA CCEEEEEHHHEECCCCCEECHHHHHHHHHHCCEEEEECCCHHHHHHCCCHHHHHHHHHHH LAHDRGPRGEIGVSRQNEGIAVRLLTDRGDDAFGFLAEVAQLLR HHHCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12810954 [H]