| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is tgt [H]
Identifier: 213691022
GI number: 213691022
Start: 118013
End: 119326
Strand: Reverse
Name: tgt [H]
Synonym: Blon_0101
Alternate gene names: 213691022
Gene position: 119326-118013 (Counterclockwise)
Preceding gene: 213691040
Following gene: 213691021
Centisome position: 4.21
GC content: 63.93
Gene sequence:
>1314_bases ATGACGATCAGCCTTCTTGAACATCCGTTGGGCGCGCAGCCCGGCCAGCCCGGCGACCGCAGCGCCTTCCATTTCGAAAC AATCACCCGCCTGCCATCCACGGCCAGCGGGCTTGGGCGAGACGGTGCCCGATACGGACGCACCGGCATCATCCACACGC CCCACGGCGATATTCGCACACCCGCGTTCGTGCCGGTGAGCACGCAAGCCGCCATGAAGGCCGTGCTGCCCGAGCAAATG AAGGAGCTCGGCGCGCAGTGTCTGCTGGCCAACGCCTTCCACCTGTTCGAACGCCCGGGCGAGGCCGTGCTGGACGCGGC CGGCGGGCTGGCGAACTTCATGAACTGGGACGGGCCCACGTTCACCGATTCCGGCGGATTCCAGGTCATGTCCCTAGGAG TCGGGTTCAAAAAGACGCTGGCGATGGACGTGACCGGCATGAAGTCGGACGACATCATCGCCAAGGGCAAGGAACGCATG GCCTGGGTGGACGAGGACGGCGTGACATTCAAGTCGCCTCTGAATGGTGACGCACATCGTTTCTCCGCTGAGATTTCGAT GGGCATCCAGCACAAAATCGGCGCAGACATCATGTTCGCGTTCGACGAACTCACCACGCTGATGAACACCCGCTCCTACC AGGAAGACTCGGTGGAGCGCACCTTCCGCTGGGCCCGTCGCTGCGTGGACGAGCACCAGCGGCTGACGGCGGAACGCCTG GGCAGGCCGTATCAGGCCTTGTACGGCGTGGTGCAGGGCGCGAACTATGAGGACCTGCGCCGGCGCGCGGCCGCGCAGAT CGCCTCTCTGGACTTCGACGGCGTGGGCATCGGCGGCGCGATCGAGAAGCGTCTCATCGGCGACACCTGCGCATGGATCT GCGACGCGATGCCGGAGAACCGTCCACGTCATGTGCTCGGCATCGCCTCCGTGGATGACATCTTCGCCTGCGTGGAGAAC GGCGGCGACACCTTCGACTGCGTGGCCCCCGCACGTTGCGCCCGCAACGGCGCGATCTACACGAGGTCGGGCCGATACAA CATCAAACGCGCCCAGCACAAGTTCGATTTCGGCCCGCTGGAGGAAGGATGCGACTGCTACACGTGCCGTCACTACTCGC GCGCATACGTCGATCACCTGCTTCGCGCACGCGAATTCAACGGTTTCACGTTGGCCACGATTCACAACGAACATTTCTTC GTGAAGCTGCTGGACGACATCCGCGCCGCCATCGACGGCGGATACTTCGATGAGTTCCGCGACGACGCGATGGCTCACTT CTACGGCAACGGCGAACGCAAGCCGGGACTGTGA
Upstream 100 bases:
>100_bases AAGCGGAAGTAGACGTTCGGGAGCGGCGAAATCCGCCCCTCGAAACCGAGTTCTTCACAATTTCCGGCCCTTTTCTGGCC CTTCTGCCTAAAGTGAACAT
Downstream 100 bases:
>100_bases TGCCGTAGCCGTCGCGCGCCGACGGCCGCGGCATCATGCCGCCACCTGCGGATCGCCGAACGGCAACCGCCAACCGCCAA CCGCGACACGCCGAAGATTG
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MTISLLEHPLGAQPGQPGDRSAFHFETITRLPSTASGLGRDGARYGRTGIIHTPHGDIRTPAFVPVSTQAAMKAVLPEQM KELGAQCLLANAFHLFERPGEAVLDAAGGLANFMNWDGPTFTDSGGFQVMSLGVGFKKTLAMDVTGMKSDDIIAKGKERM AWVDEDGVTFKSPLNGDAHRFSAEISMGIQHKIGADIMFAFDELTTLMNTRSYQEDSVERTFRWARRCVDEHQRLTAERL GRPYQALYGVVQGANYEDLRRRAAAQIASLDFDGVGIGGAIEKRLIGDTCAWICDAMPENRPRHVLGIASVDDIFACVEN GGDTFDCVAPARCARNGAIYTRSGRYNIKRAQHKFDFGPLEEGCDCYTCRHYSRAYVDHLLRAREFNGFTLATIHNEHFF VKLLDDIRAAIDGGYFDEFRDDAMAHFYGNGERKPGL
Sequences:
>Translated_437_residues MTISLLEHPLGAQPGQPGDRSAFHFETITRLPSTASGLGRDGARYGRTGIIHTPHGDIRTPAFVPVSTQAAMKAVLPEQM KELGAQCLLANAFHLFERPGEAVLDAAGGLANFMNWDGPTFTDSGGFQVMSLGVGFKKTLAMDVTGMKSDDIIAKGKERM AWVDEDGVTFKSPLNGDAHRFSAEISMGIQHKIGADIMFAFDELTTLMNTRSYQEDSVERTFRWARRCVDEHQRLTAERL GRPYQALYGVVQGANYEDLRRRAAAQIASLDFDGVGIGGAIEKRLIGDTCAWICDAMPENRPRHVLGIASVDDIFACVEN GGDTFDCVAPARCARNGAIYTRSGRYNIKRAQHKFDFGPLEEGCDCYTCRHYSRAYVDHLLRAREFNGFTLATIHNEHFF VKLLDDIRAAIDGGYFDEFRDDAMAHFYGNGERKPGL >Mature_436_residues TISLLEHPLGAQPGQPGDRSAFHFETITRLPSTASGLGRDGARYGRTGIIHTPHGDIRTPAFVPVSTQAAMKAVLPEQMK ELGAQCLLANAFHLFERPGEAVLDAAGGLANFMNWDGPTFTDSGGFQVMSLGVGFKKTLAMDVTGMKSDDIIAKGKERMA WVDEDGVTFKSPLNGDAHRFSAEISMGIQHKIGADIMFAFDELTTLMNTRSYQEDSVERTFRWARRCVDEHQRLTAERLG RPYQALYGVVQGANYEDLRRRAAAQIASLDFDGVGIGGAIEKRLIGDTCAWICDAMPENRPRHVLGIASVDDIFACVENG GDTFDCVAPARCARNGAIYTRSGRYNIKRAQHKFDFGPLEEGCDCYTCRHYSRAYVDHLLRAREFNGFTLATIHNEHFFV KLLDDIRAAIDGGYFDEFRDDAMAHFYGNGERKPGL
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=393, Percent_Identity=32.5699745547074, Blast_Score=231, Evalue=1e-60, Organism=Escherichia coli, GI1786607, Length=379, Percent_Identity=37.7308707124011, Blast_Score=266, Evalue=2e-72, Organism=Caenorhabditis elegans, GI17544680, Length=391, Percent_Identity=34.2710997442455, Blast_Score=243, Evalue=2e-64, Organism=Drosophila melanogaster, GI19920510, Length=402, Percent_Identity=34.0796019900498, Blast_Score=241, Evalue=6e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 48323; Mature: 48192
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISLLEHPLGAQPGQPGDRSAFHFETITRLPSTASGLGRDGARYGRTGIIHTPHGDIRT CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCHHCCCCCCHHHCCCCEEECCCCCCCC PAFVPVSTQAAMKAVLPEQMKELGAQCLLANAFHLFERPGEAVLDAAGGLANFMNWDGPT CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHCCCCCC FTDSGGFQVMSLGVGFKKTLAMDVTGMKSDDIIAKGKERMAWVDEDGVTFKSPLNGDAHR EECCCCCEEEEECCCHHHHHEEEECCCCCCCHHHCCCCCEEEECCCCCEECCCCCCCHHH FSAEISMGIQHKIGADIMFAFDELTTLMNTRSYQEDSVERTFRWARRCVDEHQRLTAERL HHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC GRPYQALYGVVQGANYEDLRRRAAAQIASLDFDGVGIGGAIEKRLIGDTCAWICDAMPEN CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC RPRHVLGIASVDDIFACVENGGDTFDCVAPARCARNGAIYTRSGRYNIKRAQHKFDFGPL CCCEEEEECCHHHHHHHHHCCCCEEECCCHHHHHCCCCEEEECCCCCHHHHHHCCCCCCC EEGCDCYTCRHYSRAYVDHLLRAREFNGFTLATIHNEHFFVKLLDDIRAAIDGGYFDEFR CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHH DDAMAHFYGNGERKPGL HHHHHHHCCCCCCCCCC >Mature Secondary Structure TISLLEHPLGAQPGQPGDRSAFHFETITRLPSTASGLGRDGARYGRTGIIHTPHGDIRT CCCCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCHHCCCCCCHHHCCCCEEECCCCCCCC PAFVPVSTQAAMKAVLPEQMKELGAQCLLANAFHLFERPGEAVLDAAGGLANFMNWDGPT CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHCCCCCC FTDSGGFQVMSLGVGFKKTLAMDVTGMKSDDIIAKGKERMAWVDEDGVTFKSPLNGDAHR EECCCCCEEEEECCCHHHHHEEEECCCCCCCHHHCCCCCEEEECCCCCEECCCCCCCHHH FSAEISMGIQHKIGADIMFAFDELTTLMNTRSYQEDSVERTFRWARRCVDEHQRLTAERL HHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC GRPYQALYGVVQGANYEDLRRRAAAQIASLDFDGVGIGGAIEKRLIGDTCAWICDAMPEN CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC RPRHVLGIASVDDIFACVENGGDTFDCVAPARCARNGAIYTRSGRYNIKRAQHKFDFGPL CCCEEEEECCHHHHHHHHHCCCCEEECCCHHHHHCCCCEEEECCCCCHHHHHHCCCCCCC EEGCDCYTCRHYSRAYVDHLLRAREFNGFTLATIHNEHFFVKLLDDIRAAIDGGYFDEFR CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHH DDAMAHFYGNGERKPGL HHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA