| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213690997
Identifier: 213690997
GI number: 213690997
Start: 88357
End: 89499
Strand: Direct
Name: 213690997
Synonym: Blon_0075
Alternate gene names: NA
Gene position: 88357-89499 (Clockwise)
Preceding gene: 213690996
Following gene: 213690998
Centisome position: 3.12
GC content: 62.03
Gene sequence:
>1143_bases ATGGTGGCAGACCCGGCCAATGCCAGTAGGGCAAGGTCCCGTCGTACCGCAGTACGCGGCGCGTCTTCGCCCCAGCGGAG CCTGGTCTGGCAAGCACTCGGCATCTGCGCCGAACTGCTGATTACCGCTGCCGTGATTTGCGCCCTGTACATCGGCTGGC AGATGTGGTGGACCGGTGTCGAGGCGGAGCGAGCCCAGAACGAAACCATCCAGTCCGTCGACTGGAGCGACCCCAGCAAC AACGGGGGAACGGTCACCATCGCCAAAGCCCAGGAGGGCGATGCGCCGGTACAGCCGAAAGACGCGAAATATGGCGACTT GATTGCGCAGATCTACATTCCGCGCTTCGGCTCCCAATGGCACCGCAACATCGTGGAAGGCACCACGCTCGAGCAGCTCA ATCGCCACGGTCTGGGCCATTACGACACCACCCAGATGCCGGGGCAGGTCGGCAACTTCGCCGTCGCCGGCCACCGCAAC GGCTACGGGCAGCCGTTGGGCGATGTGGACAAGTTGCAGGAAGGCGATCCCATCATCGTTCGTACCAAGGATTACTGGTA CGTCTACCACTACACCCGGTACGAGATTGTGCTGCCCACGGACATGTATGTGATCGCCCCCAATCCGGAAGACTCCACTG CCAATCCCACCAAACGCATGATCACACTGACCACCTGTGAGCCGAAATACTCCACCCCCACCCATCGATGGATCAGCTAT GGTGAGTTGGCGTACTGGGCCAAAGTGTCTGATGGCGTGCCCAAAGAGCTGGCTACTACTGATTCGTCCGGTGCAGTGAA GTTCTCCACCACCGAAACCCCCTCGATCGCTTCCCGCATTGGCTCGCTGGACAAGGTGGTATTCGGCGCGCTGGTAGTGT GGCTGGTTCTGTTCATCGCCGCTGCGGTGGCATGGCGCTGGCCGGTGCTGCGCGAGATTCGCGCGGGTGAGCGTCGCCGC CCGGATGCCAGCATCTATGGCGGACTGTTGCGTCTGCAGCCCGGCGTGGCACCGATTCGATGGCTGCTGCTGGCTCTGCT GTTGTTCGCAGCCGCCGCGGCGCTGTTCCAGTGGGGATTCCCTTGGGCCGCCGCCAATATCCCATTCCTACAGCAGATGT CGAACTTCGTGGCAGTGAGCTGA
Upstream 100 bases:
>100_bases AGCAATGAGACACGGCAGGCACAACAGCGGCGCACCGGCGCCCATTGATCTCGCGTCCGTGTCGGACGTGCAGCCCTTCC CCGAGGACGATGCCGCACGA
Downstream 100 bases:
>100_bases CGGCAGCCTAGTACTATGTCTTGCAGTACACGTCCCTCAAGGAGAGCCCTATGACCGATTCCGCGCATATTTTGGTGGTG GATAACTACGATTCCTTCGT
Product: sortase family protein
Products: NA
Alternate protein names: Integral Membrane Protein; Sortase; Sortase-Like Protein; Peptidase; Sortase Family Protein LPXTG-Site Transpeptidase; LOW QUALITY PROTEIN Integral Membrane Protein; LOW QUALITY PROTEIN Sortase; Ortase Yhcs B.Subtilis Ortholog
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MVADPANASRARSRRTAVRGASSPQRSLVWQALGICAELLITAAVICALYIGWQMWWTGVEAERAQNETIQSVDWSDPSN NGGTVTIAKAQEGDAPVQPKDAKYGDLIAQIYIPRFGSQWHRNIVEGTTLEQLNRHGLGHYDTTQMPGQVGNFAVAGHRN GYGQPLGDVDKLQEGDPIIVRTKDYWYVYHYTRYEIVLPTDMYVIAPNPEDSTANPTKRMITLTTCEPKYSTPTHRWISY GELAYWAKVSDGVPKELATTDSSGAVKFSTTETPSIASRIGSLDKVVFGALVVWLVLFIAAAVAWRWPVLREIRAGERRR PDASIYGGLLRLQPGVAPIRWLLLALLLFAAAAALFQWGFPWAAANIPFLQQMSNFVAVS
Sequences:
>Translated_380_residues MVADPANASRARSRRTAVRGASSPQRSLVWQALGICAELLITAAVICALYIGWQMWWTGVEAERAQNETIQSVDWSDPSN NGGTVTIAKAQEGDAPVQPKDAKYGDLIAQIYIPRFGSQWHRNIVEGTTLEQLNRHGLGHYDTTQMPGQVGNFAVAGHRN GYGQPLGDVDKLQEGDPIIVRTKDYWYVYHYTRYEIVLPTDMYVIAPNPEDSTANPTKRMITLTTCEPKYSTPTHRWISY GELAYWAKVSDGVPKELATTDSSGAVKFSTTETPSIASRIGSLDKVVFGALVVWLVLFIAAAVAWRWPVLREIRAGERRR PDASIYGGLLRLQPGVAPIRWLLLALLLFAAAAALFQWGFPWAAANIPFLQQMSNFVAVS >Mature_380_residues MVADPANASRARSRRTAVRGASSPQRSLVWQALGICAELLITAAVICALYIGWQMWWTGVEAERAQNETIQSVDWSDPSN NGGTVTIAKAQEGDAPVQPKDAKYGDLIAQIYIPRFGSQWHRNIVEGTTLEQLNRHGLGHYDTTQMPGQVGNFAVAGHRN GYGQPLGDVDKLQEGDPIIVRTKDYWYVYHYTRYEIVLPTDMYVIAPNPEDSTANPTKRMITLTTCEPKYSTPTHRWISY GELAYWAKVSDGVPKELATTDSSGAVKFSTTETPSIASRIGSLDKVVFGALVVWLVLFIAAAVAWRWPVLREIRAGERRR PDASIYGGLLRLQPGVAPIRWLLLALLLFAAAAALFQWGFPWAAANIPFLQQMSNFVAVS
Specific function: Unknown
COG id: COG3764
COG function: function code M; Sortase (surface protein transpeptidase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42022; Mature: 42022
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVADPANASRARSRRTAVRGASSPQRSLVWQALGICAELLITAAVICALYIGWQMWWTGV CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EAERAQNETIQSVDWSDPSNNGGTVTIAKAQEGDAPVQPKDAKYGDLIAQIYIPRFGSQW HHHHHHCCHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCHH HRNIVEGTTLEQLNRHGLGHYDTTQMPGQVGNFAVAGHRNGYGQPLGDVDKLQEGDPIIV HHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCEEE RTKDYWYVYHYTRYEIVLPTDMYVIAPNPEDSTANPTKRMITLTTCEPKYSTPTHRWISY EECCEEEEEEEEEEEEEECCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHCC GELAYWAKVSDGVPKELATTDSSGAVKFSTTETPSIASRIGSLDKVVFGALVVWLVLFIA CCEEEEEECCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHCHHHHHHHHHHHHHHHHHHH AAVAWRWPVLREIRAGERRRPDASIYGGLLRLQPGVAPIRWLLLALLLFAAAAALFQWGF HHHHHHHHHHHHHHCCCCCCCCHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCC PWAAANIPFLQQMSNFVAVS CHHHCCCHHHHHHHHHEECC >Mature Secondary Structure MVADPANASRARSRRTAVRGASSPQRSLVWQALGICAELLITAAVICALYIGWQMWWTGV CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EAERAQNETIQSVDWSDPSNNGGTVTIAKAQEGDAPVQPKDAKYGDLIAQIYIPRFGSQW HHHHHHCCHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCHH HRNIVEGTTLEQLNRHGLGHYDTTQMPGQVGNFAVAGHRNGYGQPLGDVDKLQEGDPIIV HHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCEEE RTKDYWYVYHYTRYEIVLPTDMYVIAPNPEDSTANPTKRMITLTTCEPKYSTPTHRWISY EECCEEEEEEEEEEEEEECCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHCC GELAYWAKVSDGVPKELATTDSSGAVKFSTTETPSIASRIGSLDKVVFGALVVWLVLFIA CCEEEEEECCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHCHHHHHHHHHHHHHHHHHHH AAVAWRWPVLREIRAGERRRPDASIYGGLLRLQPGVAPIRWLLLALLLFAAAAALFQWGF HHHHHHHHHHHHHHCCCCCCCCHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCC PWAAANIPFLQQMSNFVAVS CHHHCCCHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA