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The map label for this gene is ydgC [H]

Identifier: 213159030

GI number: 213159030

Start: 3849541

End: 3849879

Strand: Reverse

Name: ydgC [H]

Synonym: AB57_3738

Alternate gene names: 213159030

Gene position: 3849879-3849541 (Counterclockwise)

Preceding gene: 213159031

Following gene: 213159028

Centisome position: 95.05

GC content: 42.48

Gene sequence:

>339_bases
GTGGGCGTTATTTTAAAGTGTATGTTGGGGGCCGGGGTTGTCCTCATTATTTCGATTTTATCGAAAAGTAAGGCATTTTA
TATTGCGGGTTTAGTCCCGCTTTTTCCAACCTTCGCTTTAATTGCCCACGTAATTGTTTTTCAACAAAAAGGAGCCGAAG
CATTACAGAAAACGGCTTTATTTGGCCTATGGTCATTGATTCCTTATGCCATTTATTTAGCTGCTGTTTATGTGTTGGCA
ACGCGTATGTCAATGTGGTCTTGTCTAGGAGTCGCAACGCTATGCTGGGTTGTGGCTGCGGCAGGTTTGATTTACGGCTG
GCAATTGTTTCAAAGTTAA

Upstream 100 bases:

>100_bases
GGCGGTTCCGGCATTGATTGCTTTAGTCGCTGTTAATTTTCTTTAAAAAGCGCAAAATACAGCGTTTTGAAATGGATATG
ACCAGATAGGATCAGCGCAT

Downstream 100 bases:

>100_bases
ATTAAACACTGACCATTTAATGAACTAAATGGTCAGAACTCATCTTATTTTAGATCTGATCTAAACCTAACCATTGTCTT
TGATGGTAGGCACTATCCCA

Product: GlpM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MGVILKCMLGAGVVLIISILSKSKAFYIAGLVPLFPTFALIAHVIVFQQKGAEALQKTALFGLWSLIPYAIYLAAVYVLA
TRMSMWSCLGVATLCWVVAAAGLIYGWQLFQS

Sequences:

>Translated_112_residues
MGVILKCMLGAGVVLIISILSKSKAFYIAGLVPLFPTFALIAHVIVFQQKGAEALQKTALFGLWSLIPYAIYLAAVYVLA
TRMSMWSCLGVATLCWVVAAAGLIYGWQLFQS
>Mature_111_residues
GVILKCMLGAGVVLIISILSKSKAFYIAGLVPLFPTFALIAHVIVFQQKGAEALQKTALFGLWSLIPYAIYLAAVYVLAT
RMSMWSCLGVATLCWVVAAAGLIYGWQLFQS

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=107, Percent_Identity=47.6635514018692, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 12102; Mature: 11971

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVILKCMLGAGVVLIISILSKSKAFYIAGLVPLFPTFALIAHVIVFQQKGAEALQKTAL
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FGLWSLIPYAIYLAAVYVLATRMSMWSCLGVATLCWVVAAAGLIYGWQLFQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GVILKCMLGAGVVLIISILSKSKAFYIAGLVPLFPTFALIAHVIVFQQKGAEALQKTAL
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FGLWSLIPYAIYLAAVYVLATRMSMWSCLGVATLCWVVAAAGLIYGWQLFQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]