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The map label for this gene is ydcN [H]

Identifier: 213159023

GI number: 213159023

Start: 3843655

End: 3844203

Strand: Reverse

Name: ydcN [H]

Synonym: AB57_3731

Alternate gene names: 213159023

Gene position: 3844203-3843655 (Counterclockwise)

Preceding gene: 213159026

Following gene: 213159022

Centisome position: 94.91

GC content: 45.17

Gene sequence:

>549_bases
ATGTCTCAGCCAATCGAAATTATTGCCAAAGGTTTAACGCGTGAACGCCAAAGAGCAGGGCTTTCATTGGCAGAGGTTGC
GCGCCGTGCAGGTGTTGCCAAATCTACACTTTCTCAATTAGAGGCAGGGCAAGGTAATCCAAGTATTGAAACCTTATGGG
CACTTTGTGTTGCACTCAATATTCCATTTGCACGTCTGATGGAAGAACCGAGCAATCAAGTGCAAGTCATTCGCTGTGGC
GATGGGCCAACGGTGAGTTCGGAGATTGCCAATTACAAAGCAATTTTGTTGGCGACCTGTCCACCCCATGCGCGCCGAGA
TGTTTATTTATTGATTGTTGAGCCGGGCGAAGATCGACTTTCAGAACCACATCCAGTTGGTTCGGTAGAACATATTATTG
TAGTGGAAGGGCGAGCTTTAGTGGGTTTAATTGATGAAGCGGTTGAGCTGGGTGTTGGAGACTATATTTGTTATCCAGCC
GATCAAAAACATATATTTAGAGCTTTGGAAACAGGCACAAAGGCGTTATTAATTTCTGAGCAAAACTAA

Upstream 100 bases:

>100_bases
GTCATGGCATGATATAACGAACGATTTTCCATTATAATGAATAAGTCTGATTGTTTTGTCAAAACGAACGATCGTTTTTT
TTATAGAACGGATGGAATGA

Downstream 100 bases:

>100_bases
AGAAATTCAATCTGACTAAAATAAAAACAAAAAGCCATTTACCAGCATCTTCTACAAAAAGGGCCAATTTTGCGTATAAA
TTTTGCAATTGGCTCTCTCT

Product: transcriptional regulator, XRE family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSQPIEIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARLMEEPSNQVQVIRCG
DGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGEDRLSEPHPVGSVEHIIVVEGRALVGLIDEAVELGVGDYICYPA
DQKHIFRALETGTKALLISEQN

Sequences:

>Translated_182_residues
MSQPIEIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARLMEEPSNQVQVIRCG
DGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGEDRLSEPHPVGSVEHIIVVEGRALVGLIDEAVELGVGDYICYPA
DQKHIFRALETGTKALLISEQN
>Mature_181_residues
SQPIEIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARLMEEPSNQVQVIRCGD
GPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGEDRLSEPHPVGSVEHIIVVEGRALVGLIDEAVELGVGDYICYPAD
QKHIFRALETGTKALLISEQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=164, Percent_Identity=26.219512195122, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 19702; Mature: 19571

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPIEIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALN
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGEDRL
CCHHHHHCCCCCCEEEEECCCCCCCHHHHCCEEEEEEEECCCCCCCCEEEEEECCCHHHC
SEPHPVGSVEHIIVVEGRALVGLIDEAVELGVGDYICYPADQKHIFRALETGTKALLISE
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCEEEEEEC
QN
CC
>Mature Secondary Structure 
SQPIEIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALN
CCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
IPFARLMEEPSNQVQVIRCGDGPTVSSEIANYKAILLATCPPHARRDVYLLIVEPGEDRL
CCHHHHHCCCCCCEEEEECCCCCCCHHHHCCEEEEEEEECCCCCCCCEEEEEECCCHHHC
SEPHPVGSVEHIIVVEGRALVGLIDEAVELGVGDYICYPADQKHIFRALETGTKALLISE
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCEEEEEEC
QN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]