Click here to switch to the map view.

The map label for this gene is 213158987

Identifier: 213158987

GI number: 213158987

Start: 3807740

End: 3808369

Strand: Reverse

Name: 213158987

Synonym: AB57_3691

Alternate gene names: NA

Gene position: 3808369-3807740 (Counterclockwise)

Preceding gene: 213158988

Following gene: 213158986

Centisome position: 94.02

GC content: 40.0

Gene sequence:

>630_bases
ATGCGAGATCAGGGGCGTTTAGTCGAATGGTTCGACGAAAAGGGTTATGGCTTTATTCAGCCGGATGATGCTGAAAAAGA
GCGAGTCTTTTTGCATATCAAAGATTTTGCACGCCCTGGACCTCGGCCAATTATTGGCTGTGCACTGGAATATCTGGTAA
TCCTTGATGAAAGAGGCCGTTTTCGTGCTCAGCAGGTCACTTATTTAAAGGCATCTCAAACCCGTAAGGCTTTAAAACCT
GCAAAAACACAATCTTCTTTTCAGGCCAGCCCATGGTCTGCTATGCAAATGGGGATTGTGTTTTATTTCGTTTTAATGGG
CATTATGAGTTTTATTCATATTTTGCCAGCTTACACCTTGTTATGTGTTTTAATGATGAATGCTTTAAGTTATTGGCTTT
ATTCACAAGACAAAGAAGCCGCACAATTGGGTAATCGCCGCGTACCTGAACAAACATTACACATTGTTAGCTTTTTAGGA
GGTTGGCCAGCTGCATGGTGGGCACAGCAAAAACTGAGACATAAAACACAAAAACAACCATTTCGTAAGATTTATTTTTG
TACCATATTCTTTCATTTACTTTTGATTTTGTGGCTAATTTCTCCTTTAAACGTTTTGCGGGGATCATAA

Upstream 100 bases:

>100_bases
AGGACGTACCGGCGATGACATCTTGCAAAAAGACCCGCAAGAAATGCGAGCAATGATGCAAGACCGTTTAAGCCATGTAA
AAGCATAAAAGGGAATAAAG

Downstream 100 bases:

>100_bases
AAGTAAATTGTTTTATTAAACTTGAGAGGTATAAAAATGAATAGTTCTATCGACCAAGATCCAAATCGTACTTTAACACT
TATTTTATATGTACTTTATA

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MRDQGRLVEWFDEKGYGFIQPDDAEKERVFLHIKDFARPGPRPIIGCALEYLVILDERGRFRAQQVTYLKASQTRKALKP
AKTQSSFQASPWSAMQMGIVFYFVLMGIMSFIHILPAYTLLCVLMMNALSYWLYSQDKEAAQLGNRRVPEQTLHIVSFLG
GWPAAWWAQQKLRHKTQKQPFRKIYFCTIFFHLLLILWLISPLNVLRGS

Sequences:

>Translated_209_residues
MRDQGRLVEWFDEKGYGFIQPDDAEKERVFLHIKDFARPGPRPIIGCALEYLVILDERGRFRAQQVTYLKASQTRKALKP
AKTQSSFQASPWSAMQMGIVFYFVLMGIMSFIHILPAYTLLCVLMMNALSYWLYSQDKEAAQLGNRRVPEQTLHIVSFLG
GWPAAWWAQQKLRHKTQKQPFRKIYFCTIFFHLLLILWLISPLNVLRGS
>Mature_209_residues
MRDQGRLVEWFDEKGYGFIQPDDAEKERVFLHIKDFARPGPRPIIGCALEYLVILDERGRFRAQQVTYLKASQTRKALKP
AKTQSSFQASPWSAMQMGIVFYFVLMGIMSFIHILPAYTLLCVLMMNALSYWLYSQDKEAAQLGNRRVPEQTLHIVSFLG
GWPAAWWAQQKLRHKTQKQPFRKIYFCTIFFHLLLILWLISPLNVLRGS

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24389; Mature: 24389

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDQGRLVEWFDEKGYGFIQPDDAEKERVFLHIKDFARPGPRPIIGCALEYLVILDERGR
CCCCCCHHHHHHCCCCCCCCCCCCCCHHEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCC
FRAQQVTYLKASQTRKALKPAKTQSSFQASPWSAMQMGIVFYFVLMGIMSFIHILPAYTL
HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCVLMMNALSYWLYSQDKEAAQLGNRRVPEQTLHIVSFLGGWPAAWWAQQKLRHKTQKQP
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
FRKIYFCTIFFHLLLILWLISPLNVLRGS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDQGRLVEWFDEKGYGFIQPDDAEKERVFLHIKDFARPGPRPIIGCALEYLVILDERGR
CCCCCCHHHHHHCCCCCCCCCCCCCCHHEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCC
FRAQQVTYLKASQTRKALKPAKTQSSFQASPWSAMQMGIVFYFVLMGIMSFIHILPAYTL
HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCVLMMNALSYWLYSQDKEAAQLGNRRVPEQTLHIVSFLGGWPAAWWAQQKLRHKTQKQP
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
FRKIYFCTIFFHLLLILWLISPLNVLRGS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA