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The map label for this gene is ydcN [C]

Identifier: 213158984

GI number: 213158984

Start: 3805722

End: 3806273

Strand: Reverse

Name: ydcN [C]

Synonym: AB57_3688

Alternate gene names: 213158984

Gene position: 3806273-3805722 (Counterclockwise)

Preceding gene: 213158986

Following gene: 213158979

Centisome position: 93.97

GC content: 42.21

Gene sequence:

>552_bases
ATGAGCCAGTCGAGTAGCGTTTTACAACATGTAGGCACAAATATCCGTTCATTAAGAGATGAGCACAGTTTAAGCCAACA
GGACTTGGCTGATCGGGCAGGTGTAAGTAGACGTACCATTGCTGCTTTGGAAACAGGCCAAGTCAACATTAGCTTAGCTA
AACTCGATGCGATTGCGGCAGTATTGGGAGTAGATTTTAGAACAATTGTGAGTGCGCCTGAGCTAAAAGAACATGCCCTA
GTAAATGCACTCGCTTGGCAAGGTCAAAAGGAAGAAAGTAAGGCAACTTTTCTTGCTTCAGTTCCTTCCCGTTCTCAAGT
TGAACTTTGGACATGGTCTTTGGCTGTTGGGGAGTCTTATGTTGCTGAAGCCGATGCCGAAGGATGGCAAGAACTGATTT
ATGTGTTAGAAGGCGAATTGACCATACAATTTACAGACAGCTCAAAAACCATTGCGGCTGGTTCATCTTTTATTTTTGCT
AGTTCAGTGACTTATACTTATATCAATAGCGGTAGCCAAGTACTTAAATTTATTCGTAATGTGGTTTATTGA

Upstream 100 bases:

>100_bases
ATACTCAAACTAAAAGAAATTGTGCAATATACTGCACATATTGCGCTATTCTTCTGTTTTGTGCAATATATTGCTCAAAT
TTTCTTTATTCATCTATTTT

Downstream 100 bases:

>100_bases
TTCGAAATATATTTTCATATCAGCAATAAAAAAGAGCCTAAAGCAGCTCTTTTTTACATCTTAAAAATTAAAGACGGTTT
TCATCTAACAAAAGCTGAGC

Product: transcriptional regulator, XRE family

Products: NA

Alternate protein names: Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Transcription Regulator Protein; Y4mF Family Transcriptional Regulator; Transcriptional Regulator XRE Family

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MSQSSSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGVDFRTIVSAPELKEHAL
VNALAWQGQKEESKATFLASVPSRSQVELWTWSLAVGESYVAEADAEGWQELIYVLEGELTIQFTDSSKTIAAGSSFIFA
SSVTYTYINSGSQVLKFIRNVVY

Sequences:

>Translated_183_residues
MSQSSSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGVDFRTIVSAPELKEHAL
VNALAWQGQKEESKATFLASVPSRSQVELWTWSLAVGESYVAEADAEGWQELIYVLEGELTIQFTDSSKTIAAGSSFIFA
SSVTYTYINSGSQVLKFIRNVVY
>Mature_182_residues
SQSSSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGVDFRTIVSAPELKEHALV
NALAWQGQKEESKATFLASVPSRSQVELWTWSLAVGESYVAEADAEGWQELIYVLEGELTIQFTDSSKTIAAGSSFIFAS
SVTYTYINSGSQVLKFIRNVVY

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19914; Mature: 19782

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSSSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAA
CCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCHHHEEEEECCCEEEEHHHHHHHHH
VLGVDFRTIVSAPELKEHALVNALAWQGQKEESKATFLASVPSRSQVELWTWSLAVGESY
HHCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEEEHHCCHH
VAEADAEGWQELIYVLEGELTIQFTDSSKTIAAGSSFIFASSVTYTYINSGSQVLKFIRN
HHHCCHHHHHHHHHHHCCCEEEEEECCCCEEECCCCEEEECCEEEEEECCCHHHHHHHHH
VVY
HCC
>Mature Secondary Structure 
SQSSSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAA
CCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCHHHEEEEECCCEEEEHHHHHHHHH
VLGVDFRTIVSAPELKEHALVNALAWQGQKEESKATFLASVPSRSQVELWTWSLAVGESY
HHCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEEEHHCCHH
VAEADAEGWQELIYVLEGELTIQFTDSSKTIAAGSSFIFASSVTYTYINSGSQVLKFIRN
HHHCCHHHHHHHHHHHCCCEEEEEECCCCEEECCCCEEEECCEEEEEECCCHHHHHHHHH
VVY
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA