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The map label for this gene is yusT [H]

Identifier: 213158878

GI number: 213158878

Start: 3683871

End: 3684737

Strand: Direct

Name: yusT [H]

Synonym: AB57_3577

Alternate gene names: 213158878

Gene position: 3683871-3684737 (Clockwise)

Preceding gene: 213158875

Following gene: 213158879

Centisome position: 90.95

GC content: 39.33

Gene sequence:

>867_bases
ATGGATATCACTCAATTAAAGATGTTCCAAACCGTGGTTGAATGCGGAACAATGGCAAAGGCATCAATGCAACTGCATTG
TGTACCATCCAATATCACAACGCGCATTAAACAACTCGAAGAAGAGCTTGGAGCACCTTTGTTTTATCGTGAAGGTAAAG
CTTTAAAACTCACCCCATCAGGAGAAATCTTTCTCGATTATTGTCATAAAATTTTAGCGCTATGCGATGAGGCAAAACGA
AGCATTCATCCAGATGCACCGCCCTCTGGCCCACTCAGAATTGGTGCAATTGAATCTTCTGCTACCACTCGTCTGCCAAA
CTTACTTGCGAAATATCATCAACGTTTTCCAGAAGTTTCTATTCAAATTATTACTGGCACATGGAAACAGCTATTAGTCG
ATATTTCTCAGCATAAACTTGATGGGGCAATTGTCGCGGGTAATATTGAGTTTCCGATGCTCAATAAGCTCGGTATTTAC
CAAGAAGATATGGTCTTAATCGCATCTCACTCTTTGGGAGAAATTCATTGCCAAGAAGACCTGATTGGTAAAGAAATTTT
TATGTGGACGGAAGGCTGTCCTTACCGTGCAGCCCTTGAAGAATGGCTTAAACTTAAGAATATCTCTCTTCCTATTACCA
GCATTACTAGCTATGCCACGATTATTGGCTGTGTCAGTGCAGGCTCAGGGGTGGCGTTAGTGCCTAAAAGTATTTATGAG
CAATATAAAAACTTAGCGCATATCCAAAGTTATAAATTTGAATATCTTGCTTTTATGCAGAACCACTTTTTCTGGCACAA
AAATGTGAGTAACCATAAAGCTAGAGACATGTTTATAGAATTGATTAAGACTGAATTTAGTTTATGA

Upstream 100 bases:

>100_bases
TGCACTAATGAAATGGAGCTCTTTCATCATATGCGCATAGATAGTTGAATAAAATTAACTTATATTGAGTTAAATATTCA
TTAAAAGTGAATGATAAAAC

Downstream 100 bases:

>100_bases
ATTATTGCAATGATTGGTTTAGCGCCATTAAATGATGATTTATCGTAATCAAATCGTATGGGTTTTATCTCATTGCAGTA
CAAGCTTTATTTTTAACAGT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MDITQLKMFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPSGEIFLDYCHKILALCDEAKR
SIHPDAPPSGPLRIGAIESSATTRLPNLLAKYHQRFPEVSIQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLGIY
QEDMVLIASHSLGEIHCQEDLIGKEIFMWTEGCPYRAALEEWLKLKNISLPITSITSYATIIGCVSAGSGVALVPKSIYE
QYKNLAHIQSYKFEYLAFMQNHFFWHKNVSNHKARDMFIELIKTEFSL

Sequences:

>Translated_288_residues
MDITQLKMFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPSGEIFLDYCHKILALCDEAKR
SIHPDAPPSGPLRIGAIESSATTRLPNLLAKYHQRFPEVSIQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLGIY
QEDMVLIASHSLGEIHCQEDLIGKEIFMWTEGCPYRAALEEWLKLKNISLPITSITSYATIIGCVSAGSGVALVPKSIYE
QYKNLAHIQSYKFEYLAFMQNHFFWHKNVSNHKARDMFIELIKTEFSL
>Mature_288_residues
MDITQLKMFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPSGEIFLDYCHKILALCDEAKR
SIHPDAPPSGPLRIGAIESSATTRLPNLLAKYHQRFPEVSIQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLGIY
QEDMVLIASHSLGEIHCQEDLIGKEIFMWTEGCPYRAALEEWLKLKNISLPITSITSYATIIGCVSAGSGVALVPKSIYE
QYKNLAHIQSYKFEYLAFMQNHFFWHKNVSNHKARDMFIELIKTEFSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787806, Length=284, Percent_Identity=32.0422535211268, Blast_Score=183, Evalue=9e-48,
Organism=Escherichia coli, GI87082132, Length=243, Percent_Identity=26.7489711934156, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790208, Length=254, Percent_Identity=26.7716535433071, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI157672245, Length=246, Percent_Identity=24.390243902439, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788297, Length=241, Percent_Identity=24.4813278008299, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790262, Length=255, Percent_Identity=25.0980392156863, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790399, Length=241, Percent_Identity=26.1410788381743, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=28.9655172413793, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788887, Length=246, Percent_Identity=23.5772357723577, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786401, Length=166, Percent_Identity=28.9156626506024, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789639, Length=240, Percent_Identity=25.4166666666667, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081904, Length=153, Percent_Identity=27.4509803921569, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=246, Percent_Identity=23.9837398373984, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32518; Mature: 32518

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDITQLKMFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPS
CCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCEEEECCC
GEIFLDYCHKILALCDEAKRSIHPDAPPSGPLRIGAIESSATTRLPNLLAKYHQRFPEVS
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEE
IQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLGIYQEDMVLIASHSLGEIHCQED
EEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCCCEEEEEECCCCCEECHHH
LIGKEIFMWTEGCPYRAALEEWLKLKNISLPITSITSYATIIGCVSAGSGVALVPKSIYE
HCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHH
QYKNLAHIQSYKFEYLAFMQNHFFWHKNVSNHKARDMFIELIKTEFSL
HHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDITQLKMFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPS
CCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCEEEECCC
GEIFLDYCHKILALCDEAKRSIHPDAPPSGPLRIGAIESSATTRLPNLLAKYHQRFPEVS
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEE
IQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLGIYQEDMVLIASHSLGEIHCQED
EEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCCCEEEEEECCCCCEECHHH
LIGKEIFMWTEGCPYRAALEEWLKLKNISLPITSITSYATIIGCVSAGSGVALVPKSIYE
HCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHH
QYKNLAHIQSYKFEYLAFMQNHFFWHKNVSNHKARDMFIELIKTEFSL
HHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]