Click here to switch to the map view.

The map label for this gene is ydcR [H]

Identifier: 213158758

GI number: 213158758

Start: 4014568

End: 4015992

Strand: Reverse

Name: ydcR [H]

Synonym: AB57_3892

Alternate gene names: 213158758

Gene position: 4015992-4014568 (Counterclockwise)

Preceding gene: 213158760

Following gene: 213158749

Centisome position: 99.15

GC content: 40.35

Gene sequence:

>1425_bases
ATGACTTTTCAATATCAGGTTCTTGCCAATCAATTAGCACATCGTATTTATCAAGATGAACTTAAACCTCATCAAAAGCT
CATTTCCTTACGAGATTTTGCCCGTCAACAAGGTATTAGTTTAAGTACAGCAAAAAGTTGCTATGAATTACTTGAGGCGA
GGGGACTCATTTATGTAAAGCCGAAGTCAGGTTATTTTGTAGTTGCTCGTACCCCATCCAGCCCTATTCCGGATAGTCCG
GATTTCTTATCTTTGCCTCGGCATGTCTCAAATCTGGAGTTGCATAACCAAATTCAGGAAGCTGCCTTACAAAGTCATCT
TGTACCTTTGGGATCGATTCAGTTAACGCCGCACTTTATTCCTGTAGAAGGTTTACGTCGTTCTATTCAACGTGCTTTAA
AAAATTGTCAGCCTCAAGATTTTCTTTATTGTAATAAACAAGGTCATGAACAATTAAGAAAAGCGCTATCCGATCATTGG
CGTGAAGATGGTATTTATATCGCACCAGAAGATATTTTTATTACCAATGGCTGTATGCCGGCTTTGTCTTTAGTGATTCA
GAAGCTCACTGAAGTGGGCGATAGTATTCTTATTCCTACACCCACCTATAATGGTCATTTACAGTTATTAGCAAGTTTAA
AACGACAAATTGTTGAGATTCCGGCAGATCATCGTGGCATTGATCTTGAGCGCTTAGAATCTTTAATGCAGCAAGGTTTG
GCGAAGGTTTGCTTAATGACAGCCAATTATCAAAATCCTTTGGGATATTGCTTTAGCAATGCAGAGAAACAGAAGATTGC
TGAATTAGCTGCAAAATATCAGTGTTTTATTATTGAAGACGATATTTTTGGTGAATGTGGCTACAGTAGCGAGCGACCAT
TACCCATTCGATATTGGGATCGCGAAGGTTATGTGATTTGGTGTGGTTCAGTGTCGAAGTCTTTGTCGAGTGCGTATCGA
GTAGGATGGTTTTGTTTAACGACAAAGTTAGAGCATTTAAAGCTTGAACTGCTGGTAAGTAATATTGGCGTGAATACGCC
CTTACAGTTAGGTTTAGCTGATTTTATTTATAGTCGGGGTTATCGAGAGCATTTAGAGCAGCTACGACCAAATTTAATGC
GGCAAGTTGAAGAATACCGTAGCTGTATTTTAAGAGCCTTTGAAGGTATACCAATTGCATTGAGCCAGCCCGAAGGCGGA
TATGCATTATGGATACAGTTACCTAAGAGTGTAGATAGTTTAGCGCTCTATTACACTGCACAAGCTCAGGGAATTACAGT
GGTACCGGGCCATGTTTTTGGTGAGGATGAACGCTATCGACATTTTATTCGTTTAAACGCAGGCCATGAGTTAACAGCAG
ATGTCCGCCAAGCAATTATGAGCTTGGCAGACTGGTCTCGACAACAGATGCAAACAGTGAGTTAG

Upstream 100 bases:

>100_bases
TTAATTTCATTGGCTTGCTGCTCTCTGAGTTGATTTCCATAGCCTAAAGGTGTTCTATAAACCAGTACAGATACAGAAAT
TTTTAAAAAAGCAGCACAGA

Downstream 100 bases:

>100_bases
TTTTATTCTGCGAAGTCTGCTTTAAGCACAATGCGGTAGCGTGCTTGACCTGAGTGTAGACGTTCAATTGCTTCATTGAG
CTGTGACATTGGAAATAGCT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MTFQYQVLANQLAHRIYQDELKPHQKLISLRDFARQQGISLSTAKSCYELLEARGLIYVKPKSGYFVVARTPSSPIPDSP
DFLSLPRHVSNLELHNQIQEAALQSHLVPLGSIQLTPHFIPVEGLRRSIQRALKNCQPQDFLYCNKQGHEQLRKALSDHW
REDGIYIAPEDIFITNGCMPALSLVIQKLTEVGDSILIPTPTYNGHLQLLASLKRQIVEIPADHRGIDLERLESLMQQGL
AKVCLMTANYQNPLGYCFSNAEKQKIAELAAKYQCFIIEDDIFGECGYSSERPLPIRYWDREGYVIWCGSVSKSLSSAYR
VGWFCLTTKLEHLKLELLVSNIGVNTPLQLGLADFIYSRGYREHLEQLRPNLMRQVEEYRSCILRAFEGIPIALSQPEGG
YALWIQLPKSVDSLALYYTAQAQGITVVPGHVFGEDERYRHFIRLNAGHELTADVRQAIMSLADWSRQQMQTVS

Sequences:

>Translated_474_residues
MTFQYQVLANQLAHRIYQDELKPHQKLISLRDFARQQGISLSTAKSCYELLEARGLIYVKPKSGYFVVARTPSSPIPDSP
DFLSLPRHVSNLELHNQIQEAALQSHLVPLGSIQLTPHFIPVEGLRRSIQRALKNCQPQDFLYCNKQGHEQLRKALSDHW
REDGIYIAPEDIFITNGCMPALSLVIQKLTEVGDSILIPTPTYNGHLQLLASLKRQIVEIPADHRGIDLERLESLMQQGL
AKVCLMTANYQNPLGYCFSNAEKQKIAELAAKYQCFIIEDDIFGECGYSSERPLPIRYWDREGYVIWCGSVSKSLSSAYR
VGWFCLTTKLEHLKLELLVSNIGVNTPLQLGLADFIYSRGYREHLEQLRPNLMRQVEEYRSCILRAFEGIPIALSQPEGG
YALWIQLPKSVDSLALYYTAQAQGITVVPGHVFGEDERYRHFIRLNAGHELTADVRQAIMSLADWSRQQMQTVS
>Mature_473_residues
TFQYQVLANQLAHRIYQDELKPHQKLISLRDFARQQGISLSTAKSCYELLEARGLIYVKPKSGYFVVARTPSSPIPDSPD
FLSLPRHVSNLELHNQIQEAALQSHLVPLGSIQLTPHFIPVEGLRRSIQRALKNCQPQDFLYCNKQGHEQLRKALSDHWR
EDGIYIAPEDIFITNGCMPALSLVIQKLTEVGDSILIPTPTYNGHLQLLASLKRQIVEIPADHRGIDLERLESLMQQGLA
KVCLMTANYQNPLGYCFSNAEKQKIAELAAKYQCFIIEDDIFGECGYSSERPLPIRYWDREGYVIWCGSVSKSLSSAYRV
GWFCLTTKLEHLKLELLVSNIGVNTPLQLGLADFIYSRGYREHLEQLRPNLMRQVEEYRSCILRAFEGIPIALSQPEGGY
ALWIQLPKSVDSLALYYTAQAQGITVVPGHVFGEDERYRHFIRLNAGHELTADVRQAIMSLADWSRQQMQTVS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=286, Percent_Identity=26.9230769230769, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI33469970, Length=286, Percent_Identity=26.9230769230769, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI4507369, Length=186, Percent_Identity=27.4193548387097, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI56713256, Length=282, Percent_Identity=26.5957446808511, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI56713254, Length=282, Percent_Identity=26.5957446808511, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI1787710, Length=466, Percent_Identity=31.5450643776824, Blast_Score=252, Evalue=4e-68,
Organism=Escherichia coli, GI1790797, Length=476, Percent_Identity=30.4621848739496, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI1787909, Length=302, Percent_Identity=23.841059602649, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788627, Length=218, Percent_Identity=25.6880733944954, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21356535, Length=380, Percent_Identity=23.6842105263158, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18859735, Length=227, Percent_Identity=27.7533039647577, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28573069, Length=339, Percent_Identity=26.2536873156342, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646114, Length=339, Percent_Identity=26.2536873156342, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573067, Length=339, Percent_Identity=26.2536873156342, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573065, Length=339, Percent_Identity=26.2536873156342, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53905; Mature: 53773

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFQYQVLANQLAHRIYQDELKPHQKLISLRDFARQQGISLSTAKSCYELLEARGLIYVK
CCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEE
PKSGYFVVARTPSSPIPDSPDFLSLPRHVSNLELHNQIQEAALQSHLVPLGSIQLTPHFI
CCCCEEEEEECCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEE
PVEGLRRSIQRALKNCQPQDFLYCNKQGHEQLRKALSDHWREDGIYIAPEDIFITNGCMP
CHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEECCCCEEEECCCHH
ALSLVIQKLTEVGDSILIPTPTYNGHLQLLASLKRQIVEIPADHRGIDLERLESLMQQGL
HHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AKVCLMTANYQNPLGYCFSNAEKQKIAELAAKYQCFIIEDDIFGECGYSSERPLPIRYWD
HHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEEC
REGYVIWCGSVSKSLSSAYRVGWFCLTTKLEHLKLELLVSNIGVNTPLQLGLADFIYSRG
CCCEEEEECCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
YREHLEQLRPNLMRQVEEYRSCILRAFEGIPIALSQPEGGYALWIQLPKSVDSLALYYTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCEEEEEEE
QAQGITVVPGHVFGEDERYRHFIRLNAGHELTADVRQAIMSLADWSRQQMQTVS
CCCCEEEECCCCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TFQYQVLANQLAHRIYQDELKPHQKLISLRDFARQQGISLSTAKSCYELLEARGLIYVK
CEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEE
PKSGYFVVARTPSSPIPDSPDFLSLPRHVSNLELHNQIQEAALQSHLVPLGSIQLTPHFI
CCCCEEEEEECCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEE
PVEGLRRSIQRALKNCQPQDFLYCNKQGHEQLRKALSDHWREDGIYIAPEDIFITNGCMP
CHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEECCCCEEEECCCHH
ALSLVIQKLTEVGDSILIPTPTYNGHLQLLASLKRQIVEIPADHRGIDLERLESLMQQGL
HHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AKVCLMTANYQNPLGYCFSNAEKQKIAELAAKYQCFIIEDDIFGECGYSSERPLPIRYWD
HHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEEC
REGYVIWCGSVSKSLSSAYRVGWFCLTTKLEHLKLELLVSNIGVNTPLQLGLADFIYSRG
CCCEEEEECCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
YREHLEQLRPNLMRQVEEYRSCILRAFEGIPIALSQPEGGYALWIQLPKSVDSLALYYTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCEEEEEEE
QAQGITVVPGHVFGEDERYRHFIRLNAGHELTADVRQAIMSLADWSRQQMQTVS
CCCCEEEECCCCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]