Click here to switch to the map view.

The map label for this gene is cyoD [H]

Identifier: 213158554

GI number: 213158554

Start: 2602930

End: 2603259

Strand: Direct

Name: cyoD [H]

Synonym: AB57_2507

Alternate gene names: 213158554

Gene position: 2602930-2603259 (Clockwise)

Preceding gene: 213158553

Following gene: 213158555

Centisome position: 64.26

GC content: 40.91

Gene sequence:

>330_bases
ATGAGTAGTCATGAGCATAATGCTGCTGGTGCGTCACACGGTAACTTTAAGCAATACACTGTTGGCTTTATTCTTTCTGT
CATCCTTACCATCATCCCATTCGGGATGGTGATGGCGGGTGGTTTCAGCCGCGGTCTTTTGGTTACAGTGATTGCAATCA
CTGCCGTTGCTCAGGTTCTTGTACAACTTGTGTACTTCTTACACATGAATACATCATCTGAACAACGTTGGAATATGATT
GCATTTATCTACACAATCCTATGTATCGCTGTACTTTTAATCGGTTCTGTGTGGATTATGAATTACCTTCACTACAATAT
GATGATCTAA

Upstream 100 bases:

>100_bases
CGAATACACGTCGTCTTGCTTGCTTAAGCTTGTTCTGGCACTTCCTTGACATCGTTTGGATCTGTGTATTCAGCGTCGTT
TACTTACTGGGAGTTCTCTA

Downstream 100 bases:

>100_bases
ACTGATTGTCATGTTGAAAAAGTATTTATTCCTGACTAAACCAGGAATTCTCTTCGGTAATTTCATTACCACCTTGGGCG
GCTTCTTCTTAGCCGCCCAA

Product: cytochrome O ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSSHEHNAAGASHGNFKQYTVGFILSVILTIIPFGMVMAGGFSRGLLVTVIAITAVAQVLVQLVYFLHMNTSSEQRWNMI
AFIYTILCIAVLLIGSVWIMNYLHYNMMI

Sequences:

>Translated_109_residues
MSSHEHNAAGASHGNFKQYTVGFILSVILTIIPFGMVMAGGFSRGLLVTVIAITAVAQVLVQLVYFLHMNTSSEQRWNMI
AFIYTILCIAVLLIGSVWIMNYLHYNMMI
>Mature_108_residues
SSHEHNAAGASHGNFKQYTVGFILSVILTIIPFGMVMAGGFSRGLLVTVIAITAVAQVLVQLVYFLHMNTSSEQRWNMIA
FIYTILCIAVLLIGSVWIMNYLHYNMMI

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=107, Percent_Identity=57.0093457943925, Blast_Score=124, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 12127; Mature: 11996

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHEHNAAGASHGNFKQYTVGFILSVILTIIPFGMVMAGGFSRGLLVTVIAITAVAQVL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VQLVYFLHMNTSSEQRWNMIAFIYTILCIAVLLIGSVWIMNYLHYNMMI
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSHEHNAAGASHGNFKQYTVGFILSVILTIIPFGMVMAGGFSRGLLVTVIAITAVAQVL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VQLVYFLHMNTSSEQRWNMIAFIYTILCIAVLLIGSVWIMNYLHYNMMI
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]