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The map label for this gene is yafC [H]

Identifier: 213158538

GI number: 213158538

Start: 2584238

End: 2585140

Strand: Direct

Name: yafC [H]

Synonym: AB57_2490

Alternate gene names: 213158538

Gene position: 2584238-2585140 (Clockwise)

Preceding gene: 213158534

Following gene: 213158539

Centisome position: 63.8

GC content: 36.1

Gene sequence:

>903_bases
ATGTCTCGCCAATTTGACCATCTTGCCGATGTTGAAGTGTTTTTAATTGTGGCTGAAAAGCTTTCTATTAGTGCAGCTGC
AATTGATTTATCTACAACGCCTTCGGTCATTAGTAGAACAATTACAAGACTCGAGAAAAAATTAGGTATCCAGTTTTTTA
GAAGAACTACTCGTCATTTAAGTCTGACCGAAGCAGGCCAGCTTTACTATGAAAGAATGCAACATGCTTTTCAGTTAATT
GACCATGCTGAACGCGTGGTTCAAGGTGAACAACTACAAATTTCTGGAAAAATTAAATTAAGTGTACCTACGACTTATGG
GCACTATCGTCTACCACCCTTATTAGAAAAATTTCTTTTGAAATATCCGGACATTCAAATTGAAATTAATATTTCTAATC
GAAACGTTGACTTAATTGCTGAGGGTTTTGATTTAGCCATCCGTCAAGGACAACTTCCTAACAGCACCCTTATTGCTAGG
CCTTTAGAGCAAGCACCTTTAAAACTTGTTGCCTCACCTGCTTATTTGAAACGCATGGGTATTCCAAAAAATTTGGAAGA
ATTAAAACATCATCAATGTATTGCCTTTGAATTGCCCAGTAGCGGCAAAATAACCCCATGGTTTTTAAAAAATGATAATG
AGGAAATTCAATGGATACCAACAAATCGAATTTTAGTAAAAGAAGATATTGTGGGTGTGGTAACTCTTGCTGAAAGCGGG
CTAGGTATATGTCAAAGTTACGACTTTATTGTTAATGAAAAAATTCAACAAGGAAAACTACAACCTATACTTAATACATA
TGCAGGTCATACACGTCCTTTTTCTTTGTTATATGCGCAGCATAAACACATGTCCTCTGCTACCCGAGCTTTAATTGATT
TCTTATGTTCAAATGATGACTAG

Upstream 100 bases:

>100_bases
GCATTTGCTGGATTTATAACTGGGATGGATATATTCTATTTTTACCCCAGAGGTAGAAAAACAACTCATTTCACAAATAT
TTTTTGCGTTTGAGGACAAA

Downstream 100 bases:

>100_bases
CTAAACTGAATATATGTAAATGGTATTTAATTTTTCTAGGTGAATAGTAAATATTCTATTTTAATAGAAAGCATACAAAG
AAGACACTAAACTCCAATAA

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHLSLTEAGQLYYERMQHAFQLI
DHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLLKYPDIQIEINISNRNVDLIAEGFDLAIRQGQLPNSTLIAR
PLEQAPLKLVASPAYLKRMGIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLAESG
LGICQSYDFIVNEKIQQGKLQPILNTYAGHTRPFSLLYAQHKHMSSATRALIDFLCSNDD

Sequences:

>Translated_300_residues
MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHLSLTEAGQLYYERMQHAFQLI
DHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLLKYPDIQIEINISNRNVDLIAEGFDLAIRQGQLPNSTLIAR
PLEQAPLKLVASPAYLKRMGIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLAESG
LGICQSYDFIVNEKIQQGKLQPILNTYAGHTRPFSLLYAQHKHMSSATRALIDFLCSNDD
>Mature_299_residues
SRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHLSLTEAGQLYYERMQHAFQLID
HAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLLKYPDIQIEINISNRNVDLIAEGFDLAIRQGQLPNSTLIARP
LEQAPLKLVASPAYLKRMGIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLAESGL
GICQSYDFIVNEKIQQGKLQPILNTYAGHTRPFSLLYAQHKHMSSATRALIDFLCSNDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=32.0557491289199, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=31.0580204778157, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=30.2405498281787, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=29.7945205479452, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=29.2517006802721, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=27.6450511945392, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=28.9115646258503, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1786448, Length=272, Percent_Identity=28.3088235294118, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788706, Length=183, Percent_Identity=29.5081967213115, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788481, Length=303, Percent_Identity=25.4125412541254, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789173, Length=191, Percent_Identity=31.9371727748691, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI157672245, Length=165, Percent_Identity=27.8787878787879, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787806, Length=171, Percent_Identity=29.2397660818713, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693105, Length=167, Percent_Identity=27.5449101796407, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=126, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790011, Length=262, Percent_Identity=22.9007633587786, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=25.3521126760563, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34041; Mature: 33910

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL
CCCCCCHHCCCEEEEEEEHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
SLTEAGQLYYERMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHH
KYPDIQIEINISNRNVDLIAEGFDLAIRQGQLPNSTLIARPLEQAPLKLVASPAYLKRMG
HCCCEEEEEEECCCCEEEEECCCHHEEECCCCCCCCEEECCHHHCCHHEECCHHHHHHCC
IPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLAESG
CCCCHHHHHHCCEEEEECCCCCCEEEEEEECCCCCEEEECCCCEEEECCCEEEEEECCCC
LGICQSYDFIVNEKIQQGKLQPILNTYAGHTRPFSLLYAQHKHMSSATRALIDFLCSNDD
CCHHHCCCHHHHCHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL
CCCCCHHCCCEEEEEEEHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
SLTEAGQLYYERMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHH
KYPDIQIEINISNRNVDLIAEGFDLAIRQGQLPNSTLIARPLEQAPLKLVASPAYLKRMG
HCCCEEEEEEECCCCEEEEECCCHHEEECCCCCCCCEEECCHHHCCHHEECCHHHHHHCC
IPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLAESG
CCCCHHHHHHCCEEEEECCCCCCEEEEEEECCCCCEEEECCCCEEEECCCEEEEEECCCC
LGICQSYDFIVNEKIQQGKLQPILNTYAGHTRPFSLLYAQHKHMSSATRALIDFLCSNDD
CCHHHCCCHHHHCHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]