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The map label for this gene is sefC [H]

Identifier: 213158472

GI number: 213158472

Start: 2505878

End: 2508337

Strand: Reverse

Name: sefC [H]

Synonym: AB57_2421

Alternate gene names: 213158472

Gene position: 2508337-2505878 (Counterclockwise)

Preceding gene: 213158473

Following gene: 213158471

Centisome position: 61.93

GC content: 40.24

Gene sequence:

>2460_bases
ATGAAATATATTATAGGTGTCTTATGTGTTACATATCTTCCTGCATATGCTTTTGCTGAACAGTTACAAGACAATACGAA
TGTGCCGGTTCCAAGTATTCCGGACACGATTGACAGCAAAAGTAAAAACACGCAGATAAAGATAAATGAACAGGAGCAAG
ATAATAACGTTGCACAGCTTTTTTTAAATATTTCTATTAATTCCAACCCTTCTGAGGATTTAGTAGCCGTAAGACAAGAT
CAAGATAAAAAATTATATATCCGTACCCGTGACTTAAAAACTTTAAGACTAAAAATGGATGATTCCATTTCTGATAGCCA
GTGGATTTGTCTTAATGAGCTTAAAGATATCCGGTTTAAATACTTGGAGAATGAGCAGTCTTTAAACTTGCAAGTACCTC
CTCACATGATGACAGGCTATTCGGTTGACTTAAAAGGGCAGCAGATCACCAGTCCGCAGCTACTTAAAATAAAGCCTTTA
AACGCTGCAATCCTGAACTATAGTCTGTATCACACCATAACTAATGATGAGAATGTTTTCTCCAGTTCGGCAGAGGGAAT
TTTCAACAGTGCGATCGGTAACTTTTCGTCTGGTGTGTTATATAACGGAAATGATGAAAATAGTTATAGCCACGAAAAAT
GGGTACGTCTGGAAAGTAAATGGCAATATGTAGACCCTGAAAAGATCAGGATATATACCCTAGGGGACTTTATCTCCAAT
AGTTCGGATTGGGGCAGCAGCGTCCGCCTTGCAGGCTTTCAATGGTCGAGTGCCTATACTCAACGTGGCGATATTGTCAC
TTCGGCACTGCCACAATTCTCCGGTTCAGCCGCACTGCCTTCAACACTGGATTTATACGTTAACCAGCAAAAGATTTATT
CAGGACTTGTCCCGTCAGGCCCTTTTGATATTAAACAGCTCCCGTTTATTTCCGGAAATGAGGTCACACTTGTAACTACG
GATGCCACTGGACGGCAGAGCATTACCAAAAAGCCTTACTATTTTTCATCCAAGATTCTGGCAAAAGGTATTAATGAGTT
TTCAGTGGATGTTGGGGTTCCGCGCTATAACTATGGCCTATACTCGAACGATTATGACGATGCTACCTTTGCATCAGGGG
CAATTCGATATGGTTACAGCAACTCATTAACCTTAAGCGGTGGGGTGGAGGCTTCAACAGATGGTTTGTCTAACATTGGA
ACAGGCTTTGCCAAGAACCTGTTCGGTATTGGGGTGATTAATGCTGATATTGCAGCAAGCCAGTATAAAGATGAAAACGG
TTATTCTGCCTTGTTAGGTTTAGAAGGTCGGATTAGTAAAAATATTTCTTTTAACACCAGTTACCGCAAAATATTCGATA
ACTATTTTGATTTGGCACGCGTATCTCAGGTTCGATATTTAAAAGATAATCAGAGCGATGCTGAGTCACAAAACTACCTC
AACTACAGTGCGCTGGCAGATGAAATTTTTAGGGCAGGAATTAACTATAACTTTTATGCAGGTTATGGGGCCTATCTGGG
GTATAACCAGATTAAATATAGTGATAACCAATATAAACTGCTATCGGCCAATTTAAGTGGAAGTCTGAACAAGAACTGGG
GATTTTATACCTCTGCCTATAAAGATTATGAAAATCACAAGGACTACGGTATTTACTTTGCGCTGCGATATACACCTTCG
AATAAATTCAATGCCATTACTAGTGTTTCTAGCGACAGCGGTAGATTGAGTTATCGACAAGAAATTTTCGGTTTGTCGGA
CCCGCAAATTGGGTCATTTGGATGGGGAGGCTATGTTGAGCGAGATCAAGATAACCACGACAACAATGCATCGATCTATG
CCTCTTACCGTGCCCGTGCTGCTTATTTGGCAGGTCGCTATAACCGAATTGGAGATAACGATCAGGTTGCTCTTTCGGCA
ACGGGATCTTTGGTAGCTGCAGCAGGACGGCTCTTTGCGGCCAATGAAATTGGAGATGGATATGCTGTTGTCACTAATGC
AGGCCCACAAAGCCAAATCTTAAATGGTGGAGTAAATTTAGGCTTTACGGATAAATCAGGGAGATTTTTGATTCCTAGTC
TCATGCCATATCAAGAGAACCATATTTATTTAGATCCTTCATTCTTGCCTCTAAATTGGAGCGTTAACTCCACTGAACAA
AAAACTGTTGTAGGTTATCGCCAAGGAACAATGATTGATTTTGGCGCACATCAGGTCATCTCAGGATTAGTGAAACTTGT
TGATAAAAATAACTCACCGTTATTACCGGGGTATAGCGTTCAAATTAATGGACAGCAAGATGGAGTGGTTGGCTATGACG
GTGAAGTGTTTATTTCAAACTTATTAAAACAAAACAAACTTGTAGTCGATCTTCTTGATCATGGCTCATGCCAAGTTGAC
TTTACCTATAACAGTAATCAGTACTCAACTAAAAAATTGGGACCTTATGTATGTCATTAA

Upstream 100 bases:

>100_bases
ACGAAGCTATCCGATTAGTAATTTTTCATATCAGCCCGACCATAAATACAGTATTTCCTTAACAGTTAATGGTAAGAAAG
TCACGCTATAAGAGGCTTAT

Downstream 100 bases:

>100_bases
ATTTTATGAATAAGGCTCAAATAGAGAGCTATAAAAAACTTCCACGGTCTTTAAAATACTTCATAGGCATTTGCTTATTT
TATCTCGTTTATGCATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 819; Mature: 819

Protein sequence:

>819_residues
MKYIIGVLCVTYLPAYAFAEQLQDNTNVPVPSIPDTIDSKSKNTQIKINEQEQDNNVAQLFLNISINSNPSEDLVAVRQD
QDKKLYIRTRDLKTLRLKMDDSISDSQWICLNELKDIRFKYLENEQSLNLQVPPHMMTGYSVDLKGQQITSPQLLKIKPL
NAAILNYSLYHTITNDENVFSSSAEGIFNSAIGNFSSGVLYNGNDENSYSHEKWVRLESKWQYVDPEKIRIYTLGDFISN
SSDWGSSVRLAGFQWSSAYTQRGDIVTSALPQFSGSAALPSTLDLYVNQQKIYSGLVPSGPFDIKQLPFISGNEVTLVTT
DATGRQSITKKPYYFSSKILAKGINEFSVDVGVPRYNYGLYSNDYDDATFASGAIRYGYSNSLTLSGGVEASTDGLSNIG
TGFAKNLFGIGVINADIAASQYKDENGYSALLGLEGRISKNISFNTSYRKIFDNYFDLARVSQVRYLKDNQSDAESQNYL
NYSALADEIFRAGINYNFYAGYGAYLGYNQIKYSDNQYKLLSANLSGSLNKNWGFYTSAYKDYENHKDYGIYFALRYTPS
NKFNAITSVSSDSGRLSYRQEIFGLSDPQIGSFGWGGYVERDQDNHDNNASIYASYRARAAYLAGRYNRIGDNDQVALSA
TGSLVAAAGRLFAANEIGDGYAVVTNAGPQSQILNGGVNLGFTDKSGRFLIPSLMPYQENHIYLDPSFLPLNWSVNSTEQ
KTVVGYRQGTMIDFGAHQVISGLVKLVDKNNSPLLPGYSVQINGQQDGVVGYDGEVFISNLLKQNKLVVDLLDHGSCQVD
FTYNSNQYSTKKLGPYVCH

Sequences:

>Translated_819_residues
MKYIIGVLCVTYLPAYAFAEQLQDNTNVPVPSIPDTIDSKSKNTQIKINEQEQDNNVAQLFLNISINSNPSEDLVAVRQD
QDKKLYIRTRDLKTLRLKMDDSISDSQWICLNELKDIRFKYLENEQSLNLQVPPHMMTGYSVDLKGQQITSPQLLKIKPL
NAAILNYSLYHTITNDENVFSSSAEGIFNSAIGNFSSGVLYNGNDENSYSHEKWVRLESKWQYVDPEKIRIYTLGDFISN
SSDWGSSVRLAGFQWSSAYTQRGDIVTSALPQFSGSAALPSTLDLYVNQQKIYSGLVPSGPFDIKQLPFISGNEVTLVTT
DATGRQSITKKPYYFSSKILAKGINEFSVDVGVPRYNYGLYSNDYDDATFASGAIRYGYSNSLTLSGGVEASTDGLSNIG
TGFAKNLFGIGVINADIAASQYKDENGYSALLGLEGRISKNISFNTSYRKIFDNYFDLARVSQVRYLKDNQSDAESQNYL
NYSALADEIFRAGINYNFYAGYGAYLGYNQIKYSDNQYKLLSANLSGSLNKNWGFYTSAYKDYENHKDYGIYFALRYTPS
NKFNAITSVSSDSGRLSYRQEIFGLSDPQIGSFGWGGYVERDQDNHDNNASIYASYRARAAYLAGRYNRIGDNDQVALSA
TGSLVAAAGRLFAANEIGDGYAVVTNAGPQSQILNGGVNLGFTDKSGRFLIPSLMPYQENHIYLDPSFLPLNWSVNSTEQ
KTVVGYRQGTMIDFGAHQVISGLVKLVDKNNSPLLPGYSVQINGQQDGVVGYDGEVFISNLLKQNKLVVDLLDHGSCQVD
FTYNSNQYSTKKLGPYVCH
>Mature_819_residues
MKYIIGVLCVTYLPAYAFAEQLQDNTNVPVPSIPDTIDSKSKNTQIKINEQEQDNNVAQLFLNISINSNPSEDLVAVRQD
QDKKLYIRTRDLKTLRLKMDDSISDSQWICLNELKDIRFKYLENEQSLNLQVPPHMMTGYSVDLKGQQITSPQLLKIKPL
NAAILNYSLYHTITNDENVFSSSAEGIFNSAIGNFSSGVLYNGNDENSYSHEKWVRLESKWQYVDPEKIRIYTLGDFISN
SSDWGSSVRLAGFQWSSAYTQRGDIVTSALPQFSGSAALPSTLDLYVNQQKIYSGLVPSGPFDIKQLPFISGNEVTLVTT
DATGRQSITKKPYYFSSKILAKGINEFSVDVGVPRYNYGLYSNDYDDATFASGAIRYGYSNSLTLSGGVEASTDGLSNIG
TGFAKNLFGIGVINADIAASQYKDENGYSALLGLEGRISKNISFNTSYRKIFDNYFDLARVSQVRYLKDNQSDAESQNYL
NYSALADEIFRAGINYNFYAGYGAYLGYNQIKYSDNQYKLLSANLSGSLNKNWGFYTSAYKDYENHKDYGIYFALRYTPS
NKFNAITSVSSDSGRLSYRQEIFGLSDPQIGSFGWGGYVERDQDNHDNNASIYASYRARAAYLAGRYNRIGDNDQVALSA
TGSLVAAAGRLFAANEIGDGYAVVTNAGPQSQILNGGVNLGFTDKSGRFLIPSLMPYQENHIYLDPSFLPLNWSVNSTEQ
KTVVGYRQGTMIDFGAHQVISGLVKLVDKNNSPLLPGYSVQINGQQDGVVGYDGEVFISNLLKQNKLVVDLLDHGSCQVD
FTYNSNQYSTKKLGPYVCH

Specific function: Involved in the export and assembly of the sefA fimbrial subunit [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1788427, Length=627, Percent_Identity=22.9665071770335, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1786332, Length=779, Percent_Identity=24.9037227214377, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1789533, Length=580, Percent_Identity=23.9655172413793, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91017; Mature: 91017

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYIIGVLCVTYLPAYAFAEQLQDNTNVPVPSIPDTIDSKSKNTQIKINEQEQDNNVAQL
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE
FLNISINSNPSEDLVAVRQDQDKKLYIRTRDLKTLRLKMDDSISDSQWICLNELKDIRFK
EEEEEECCCCCCCEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEHHHHHHHHHH
YLENEQSLNLQVPPHMMTGYSVDLKGQQITSPQLLKIKPLNAAILNYSLYHTITNDENVF
EECCCCCEEEECCCCHHCCEEEEECCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCHHH
SSSAEGIFNSAIGNFSSGVLYNGNDENSYSHEKWVRLESKWQYVDPEKIRIYTLGDFISN
CCCCCHHHHHHHCCCCCCEEECCCCCCCCCCHHEEEECCCCCCCCCCEEEEEEEHHHHCC
SSDWGSSVRLAGFQWSSAYTQRGDIVTSALPQFSGSAALPSTLDLYVNQQKIYSGLVPSG
CCCCCCEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEHHHHHHCCCCCC
PFDIKQLPFISGNEVTLVTTDATGRQSITKKPYYFSSKILAKGINEFSVDVGVPRYNYGL
CCCHHHCCEECCCEEEEEEECCCCCCCCCCCCCEECHHHHHCCCCCEEEEECCCCEECCC
YSNDYDDATFASGAIRYGYSNSLTLSGGVEASTDGLSNIGTGFAKNLFGIGVINADIAAS
CCCCCCCCHHCCCEEEECCCCCEEECCCCCCCCCCHHHHCCHHHHHHHEEEEEECCHHHH
QYKDENGYSALLGLEGRISKNISFNTSYRKIFDNYFDLARVSQVRYLKDNQSDAESQNYL
HCCCCCCCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCE
NYSALADEIFRAGINYNFYAGYGAYLGYNQIKYSDNQYKLLSANLSGSLNKNWGFYTSAY
EHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCEEEHHH
KDYENHKDYGIYFALRYTPSNKFNAITSVSSDSGRLSYRQEIFGLSDPQIGSFGWGGYVE
HHCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCEEHHHHHCCCCCCCCCCCCCCCCEE
RDQDNHDNNASIYASYRARAAYLAGRYNRIGDNDQVALSATGSLVAAAGRLFAANEIGDG
CCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHCCEEEECCCCCC
YAVVTNAGPQSQILNGGVNLGFTDKSGRFLIPSLMPYQENHIYLDPSFLPLNWSVNSTEQ
EEEEECCCCHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEECCCEEEEEECCCCCCC
KTVVGYRQGTMIDFGAHQVISGLVKLVDKNNSPLLPGYSVQINGQQDGVVGYDGEVFISN
EEEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEECCCCHHHHHH
LLKQNKLVVDLLDHGSCQVDFTYNSNQYSTKKLGPYVCH
HHHCCCEEEEEECCCCEEEEEEECCCCCCHHCCCCCCCC
>Mature Secondary Structure
MKYIIGVLCVTYLPAYAFAEQLQDNTNVPVPSIPDTIDSKSKNTQIKINEQEQDNNVAQL
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE
FLNISINSNPSEDLVAVRQDQDKKLYIRTRDLKTLRLKMDDSISDSQWICLNELKDIRFK
EEEEEECCCCCCCEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEHHHHHHHHHH
YLENEQSLNLQVPPHMMTGYSVDLKGQQITSPQLLKIKPLNAAILNYSLYHTITNDENVF
EECCCCCEEEECCCCHHCCEEEEECCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCHHH
SSSAEGIFNSAIGNFSSGVLYNGNDENSYSHEKWVRLESKWQYVDPEKIRIYTLGDFISN
CCCCCHHHHHHHCCCCCCEEECCCCCCCCCCHHEEEECCCCCCCCCCEEEEEEEHHHHCC
SSDWGSSVRLAGFQWSSAYTQRGDIVTSALPQFSGSAALPSTLDLYVNQQKIYSGLVPSG
CCCCCCEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEHHHHHHCCCCCC
PFDIKQLPFISGNEVTLVTTDATGRQSITKKPYYFSSKILAKGINEFSVDVGVPRYNYGL
CCCHHHCCEECCCEEEEEEECCCCCCCCCCCCCEECHHHHHCCCCCEEEEECCCCEECCC
YSNDYDDATFASGAIRYGYSNSLTLSGGVEASTDGLSNIGTGFAKNLFGIGVINADIAAS
CCCCCCCCHHCCCEEEECCCCCEEECCCCCCCCCCHHHHCCHHHHHHHEEEEEECCHHHH
QYKDENGYSALLGLEGRISKNISFNTSYRKIFDNYFDLARVSQVRYLKDNQSDAESQNYL
HCCCCCCCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCE
NYSALADEIFRAGINYNFYAGYGAYLGYNQIKYSDNQYKLLSANLSGSLNKNWGFYTSAY
EHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCEEEHHH
KDYENHKDYGIYFALRYTPSNKFNAITSVSSDSGRLSYRQEIFGLSDPQIGSFGWGGYVE
HHCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCEEHHHHHCCCCCCCCCCCCCCCCEE
RDQDNHDNNASIYASYRARAAYLAGRYNRIGDNDQVALSATGSLVAAAGRLFAANEIGDG
CCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHCCEEEECCCCCC
YAVVTNAGPQSQILNGGVNLGFTDKSGRFLIPSLMPYQENHIYLDPSFLPLNWSVNSTEQ
EEEEECCCCHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEECCCEEEEEECCCCCCC
KTVVGYRQGTMIDFGAHQVISGLVKLVDKNNSPLLPGYSVQINGQQDGVVGYDGEVFISN
EEEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEECCCCHHHHHH
LLKQNKLVVDLLDHGSCQVDFTYNSNQYSTKKLGPYVCH
HHHCCCEEEEEECCCCEEEEEEECCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8097515 [H]