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The map label for this gene is ydcO [H]

Identifier: 213158440

GI number: 213158440

Start: 2476137

End: 2477309

Strand: Direct

Name: ydcO [H]

Synonym: AB57_2389

Alternate gene names: 213158440

Gene position: 2476137-2477309 (Clockwise)

Preceding gene: 213158438

Following gene: 213158446

Centisome position: 61.13

GC content: 40.49

Gene sequence:

>1173_bases
ATGCAAAAGATTCTTCAAGATTTCTCAATACCAGCCGTATTTGCTGGTTTTATTACCTTTCTTATTGGTATTAGTGTTTC
GGCTATTTTAGTGATTCAGGCTGCTCAAGCTTTAGGTGCGTCATCTGAACAAATCACCTCATGGTTTTGGGCTTTAGGCT
TAGGTATTGGTTTATCAGGACTCATCCTTTCTTGGAAATTTAAATATCCCGTAGCAACAGCTTGGTCAACAGCGGGCCTC
GCTTTAATTATGGCAACAGGTAGTGGCTATAGTTTAAATGAAGCAATTGGCGCTTTTTTAGTAGGTGGTTTACTTACTGC
GATTTTAGGCTTTTCAGGTATATTCCAAAAAGCGCTTTCCTATATACCACAAAGCTTAACCAGTGCCATGCTTGCCGGAG
TTTTGCTTAAGTTTGGGATTTCACTTTTCGCGAGCTTGCAAAATGATTGGACATTTGTTTTATCTTTACTCGCCATTTAT
GTCATTACAAAAAGATTATGGCCGCGTTACAGCATCGTATTTACCGCACTGGCTGGTATTGGCCTCTGCCCTGTTTTTTT
AGACTTTCATATGCCTACTCTTGAGTGGTCCTTGGCTAAACCCGTTTGGATTAGTCCTGAATTTAGCTGGTCAGCACTTT
TAGGCTTAGCATTACCACTTTTTGTGATTAGCATGGCGTCGCAATATTTACCCGGTATAGCCATGATCAAGAGTTATGGC
TATAAACCACATGTTAATCAACTGATTGGTTGGACTGGTTTAACTCAAGTTGTGCTTGCACCTTTTGGATGTTACAGCGT
TAATATTGCTGCGATAAGTGCTGCCGTAAGCTTAGACGACCAAGTTCATCCTGATCCAAGCAAACGTTATATTGCGGGTA
TAAGCTGTGGCTTTTTTTATGTGTTGATGGGGCTATTTGCTGCAACTCTCACAAGCTTGCTGATGTCTTTTCCTCATATT
TTTATTGTAGCGTTAGCAGGCATTGCCTTACTTGGTACGATTAGTCACAACATTGCGCTTGCGTTTGGTCCAGTTGAAGA
CCGCGAAGCGGCATTATTTACCTTTTTATGTAGTGCATCAGGTATCCAATTTTTCGGTGTTGGTTCAGCTTTCTGGGGAC
TGGTTGTCGGTATTGTTGTATTTATAGTCCTTAAATTTAAACCTAAAAAATAA

Upstream 100 bases:

>100_bases
AAAAATAGAAAGCACCTTCTTAAAAAAAATTGTTAGATTTACCTAGCTGAAAACATAGGCAGAAACATATTAATTTTTCA
GGGACTTAGAACATTTAGCT

Downstream 100 bases:

>100_bases
GGCTTAAACGAAAGAGTTTGCGCTTCATCATTTAGAGAAATTCATAAAAAATTAAACGCAAACTCTCGTTAAATTAGTTA
ATTGTGTTTTTATCCCAAAA

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MQKILQDFSIPAVFAGFITFLIGISVSAILVIQAAQALGASSEQITSWFWALGLGIGLSGLILSWKFKYPVATAWSTAGL
ALIMATGSGYSLNEAIGAFLVGGLLTAILGFSGIFQKALSYIPQSLTSAMLAGVLLKFGISLFASLQNDWTFVLSLLAIY
VITKRLWPRYSIVFTALAGIGLCPVFLDFHMPTLEWSLAKPVWISPEFSWSALLGLALPLFVISMASQYLPGIAMIKSYG
YKPHVNQLIGWTGLTQVVLAPFGCYSVNIAAISAAVSLDDQVHPDPSKRYIAGISCGFFYVLMGLFAATLTSLLMSFPHI
FIVALAGIALLGTISHNIALAFGPVEDREAALFTFLCSASGIQFFGVGSAFWGLVVGIVVFIVLKFKPKK

Sequences:

>Translated_390_residues
MQKILQDFSIPAVFAGFITFLIGISVSAILVIQAAQALGASSEQITSWFWALGLGIGLSGLILSWKFKYPVATAWSTAGL
ALIMATGSGYSLNEAIGAFLVGGLLTAILGFSGIFQKALSYIPQSLTSAMLAGVLLKFGISLFASLQNDWTFVLSLLAIY
VITKRLWPRYSIVFTALAGIGLCPVFLDFHMPTLEWSLAKPVWISPEFSWSALLGLALPLFVISMASQYLPGIAMIKSYG
YKPHVNQLIGWTGLTQVVLAPFGCYSVNIAAISAAVSLDDQVHPDPSKRYIAGISCGFFYVLMGLFAATLTSLLMSFPHI
FIVALAGIALLGTISHNIALAFGPVEDREAALFTFLCSASGIQFFGVGSAFWGLVVGIVVFIVLKFKPKK
>Mature_390_residues
MQKILQDFSIPAVFAGFITFLIGISVSAILVIQAAQALGASSEQITSWFWALGLGIGLSGLILSWKFKYPVATAWSTAGL
ALIMATGSGYSLNEAIGAFLVGGLLTAILGFSGIFQKALSYIPQSLTSAMLAGVLLKFGISLFASLQNDWTFVLSLLAIY
VITKRLWPRYSIVFTALAGIGLCPVFLDFHMPTLEWSLAKPVWISPEFSWSALLGLALPLFVISMASQYLPGIAMIKSYG
YKPHVNQLIGWTGLTQVVLAPFGCYSVNIAAISAAVSLDDQVHPDPSKRYIAGISCGFFYVLMGLFAATLTSLLMSFPHI
FIVALAGIALLGTISHNIALAFGPVEDREAALFTFLCSASGIQFFGVGSAFWGLVVGIVVFIVLKFKPKK

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=388, Percent_Identity=42.2680412371134, Blast_Score=292, Evalue=3e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41739; Mature: 41739

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKILQDFSIPAVFAGFITFLIGISVSAILVIQAAQALGASSEQITSWFWALGLGIGLSG
CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHH
LILSWKFKYPVATAWSTAGLALIMATGSGYSLNEAIGAFLVGGLLTAILGFSGIFQKALS
HHEEEEECCCCHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIPQSLTSAMLAGVLLKFGISLFASLQNDWTFVLSLLAIYVITKRLWPRYSIVFTALAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GLCPVFLDFHMPTLEWSLAKPVWISPEFSWSALLGLALPLFVISMASQYLPGIAMIKSYG
HHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
YKPHVNQLIGWTGLTQVVLAPFGCYSVNIAAISAAVSLDDQVHPDPSKRYIAGISCGFFY
CCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHH
VLMGLFAATLTSLLMSFPHIFIVALAGIALLGTISHNIALAFGPVEDREAALFTFLCSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCC
GIQFFGVGSAFWGLVVGIVVFIVLKFKPKK
CCEEEECHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQKILQDFSIPAVFAGFITFLIGISVSAILVIQAAQALGASSEQITSWFWALGLGIGLSG
CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHH
LILSWKFKYPVATAWSTAGLALIMATGSGYSLNEAIGAFLVGGLLTAILGFSGIFQKALS
HHEEEEECCCCHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIPQSLTSAMLAGVLLKFGISLFASLQNDWTFVLSLLAIYVITKRLWPRYSIVFTALAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GLCPVFLDFHMPTLEWSLAKPVWISPEFSWSALLGLALPLFVISMASQYLPGIAMIKSYG
HHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
YKPHVNQLIGWTGLTQVVLAPFGCYSVNIAAISAAVSLDDQVHPDPSKRYIAGISCGFFY
CCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHH
VLMGLFAATLTSLLMSFPHIFIVALAGIALLGTISHNIALAFGPVEDREAALFTFLCSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCC
GIQFFGVGSAFWGLVVGIVVFIVLKFKPKK
CCEEEECHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]