| Definition | Acinetobacter baumannii AB0057, complete genome. |
|---|---|
| Accession | NC_011586 |
| Length | 4,050,513 |
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The map label for this gene is rapA [H]
Identifier: 213158175
GI number: 213158175
Start: 2981586
End: 2984414
Strand: Reverse
Name: rapA [H]
Synonym: AB57_2892
Alternate gene names: 213158175
Gene position: 2984414-2981586 (Counterclockwise)
Preceding gene: 213158176
Following gene: 213158172
Centisome position: 73.68
GC content: 42.17
Gene sequence:
>2829_bases TTGCAGCAGTATGCTATTGGTCAACGTTGGCTATCAGATACAGAGACTGAGCTCGGTTTAGGCGTTCTTATTGATGTAGA TGAAAGATCTGTCAGCATTTTATTCCCCAAGAGCGATGAAACGCGTGTTTATGCACGCAACAATGCACCGCTTTCTCGCA TCATCTTTAATGTAAATGATGAAGTTCAAGACCAAGAAGGCAATAAGTGGAATGTCGAGTCTATTGAAGACCGTCATGGT GTTTTGCGTTATAACGTGGTTCGTACTTTAGAAAATGGCGAGCAAGAACGTAAAGCGCTAAACGAAACACGTATTGGTGC ACAAATTCAATTATCAAAACCTTTAGATCGTTTGCTGGCAAGCCAGATTGATTATAAAGAGTGGTATGACCTACGCATTG AAGCAATGCTGATGCAGGCGCAAATGCAAACCAGCCCATTACGCGGCTTGGTTGGGGCGCGTGTAGGTTTAATTCCGCAT CAGCTCTATATTGCACATGAAGTCGGTAAACGTTTCGCACCACGTGTTTTACTTGCTGATGAAGTAGGTTTAGGTAAAAC AATTGAAGCTGGTTTAATTATCCACCAACAGCTTAAAACCGGCCGTTCTGAACGTATCCTGATTTTAGTCCCTGATTCTC TTCAGTATCAGTGGATGATTGAAATGCGACGCCGTTTCAATTTGCAATTTTCTCTGTTTGATTTAACCCGTACTGCATCT ATCAAAGAACATGATCCAGAACTTAACCCGTTCTTAACTGAGCAATGCATTATTGCCAGCGTCGACTTGATGGTGGACCA TGACGATTTGCGTGAGCAAGCATTAGAAGCTGGTTTCGATTTACTCGTCGTCGATGAAGCACATCACTTGATGTGGAGCG AAGAAGAGGGTGGTAACGATCGTTACGACTTGGTTGAAGAGCTTGCTGAAAATACGGCAGGTGTATTGTTGCTGACAGCA ACGCCTGAACAGCTGGGTGTGGAAAGCCACTTTGCGCGTTTACGTTTGTTAGATCCACAGCGCTTTAGCAGTTTAGAGCG TTTCTTGGATGAAGAAGCTCAATATCAGCAAACTGCGCAAGTTGCAGAAGTGCTTATGTCGGATGAGCCTTTAACTCAAG AGCATTTATCTGCTTTAGAAGGTTTGTTAGGTCATTCAATTGAAGACCAACCTGAACAACGTTTCAGAGCGATTCACGAG TTGTTAGACCGTCACGGTACAGGTCGTATTTTATTCCGTAATACGCGTGAAGCGATTCAAGGCTTCCCTGGCCGTGATTG CCAACCTGCGCCTTTACCTGCGCCAGCAGATTGGTCAAAAGACGGTAAATTACGCGAACAAATGTGGCCAGAAGAAGCAC AAATTGATGGCTCATGGATGCAAAATGATCCGCGTGTACCGTGGTTAATGGAAATTCTACGTAAAGAACTTAAGCATAAA AAAGTTCTTTTAATTGCCCGTAGTGGTCCTGTTGTCGAGTCTTTAGAAAGTGCGCTTCGTTTGCATGCAGGTATTCGTAC AGCTATGTTTCATGAAGGTATGAGTTTGCTTGAGCGTGACCAAGCGGCTGCTTACTTTGCAGAAGAAAGCTACGGTGCTC AAATCTTACTTTGTTCAGAAATTGGTTCAGAAGGCCGTAACTTCCAGTTTGCGAGTGATTTAATTTTATTTGATTTGCCT GCAAACCCTGACGTTTTAGAACAACGTATTGGTCGTTTAGACCGTATTGGTCAAGAAAACCGTATCCAGATTCATGTACC GTATTTAATGGGCACCGCTCAAGAGCGTATGTTCCGTTGGTACAATGAAGCATTGAATATTTTCAGCAATATTTCTCCAA CAGCTCAAACGCTACAAGAGAACTTTATTGTTGAATTAAAAGATTGCTTGCTTGCCGACCAAGGTCAAACATTTGAAGAT TTACTCGAAGAAGTTAATGTTCAACGCCAAGCTTTAGAAGCAGAGTTACAAGCTGGTCGAGACCGTTTGCTTGAGTACAA CTCATGTCGTCCTATCGTTGCACAAGAAATTGTTCAAGCGTTAGAAGACTATGATGACAACACAACGCTACCTATGTTTG TGAAGCGTTTCATGTCTTCAACTAATATTGACTTTGATGAGCAAAGTAACGGTACAGTCATTATTCGTCCAACCGATCAG ATGCAAGTGCAAGGTTTGGCATTAGACGAAGAAGGTATGACAGCGACTTTCTATCGTGACCAAGCGCAAATGCGTGAAGA CGCTCAGTATCTAACTTTGGAACATCCGTTTATTGAAAGTGTCATGGAAATGATCCGCACACAATCATTTGGTAGTACCA ATGTTGCTGTGCTTAAGTCCAATGCATTAAAGCAAGGTTCGGTTTTACTTGAAGTCTGGTTTAAAGTTGATGTGGTGGCA CCAAAATCCTTGAACTTGCCATCAAGCTTACCAAAACAACTTATTCGCGTATTGTTAAGTGAAAATGGTCAGGACTTATC TGAAAAGATTGATCCAACCATTTTAAAACCGTATTTGCATCACTTAGATGGCAATAGCTGCCGCCAAGTGGTTAAAGCCC GTCGTGAAGTGATTGAAGAGCGTTATAAACAAGCGCTTGATATTGCTAAAGAAGGTTTACCTCAGCTTCAACAGCAAGCA AAAGAGCATTATGGTAATAAATGGCAATATGAGATTGATCGTTTAACTTACTTAAAACAGTTCAACCCGAGCATTCGCCA AGACGAAATTGAGCGCTTACAGAAGTTGCAAAAAGAAGGTTTAAGCTTGCTTGATGGCTTAACTGTAACCCCTGAAGCGA TTCAAGTGCTTGTAGTAGTTAAACCATAA
Upstream 100 bases:
>100_bases GCTGCAAAATTTTGCTTTAAAGACTACATAAAAAGATGCAAAAATAAGCTACTTTGCATCGTACAATATGTAGTGCGAAC TTGAGAAAAAGGTGGAAAAA
Downstream 100 bases:
>100_bases GCAATGAGTAATAAAAAAAGCGCCACACAGGCGCTTTTTTTATTGAGTAAATTTTGGTTAAATTAATCTGGCATCTTTTA ATTCTAGTTTTAAATAAGCA
Product: ATP-dependent helicase HepA
Products: NA
Alternate protein names: ATP-dependent helicase hepA [H]
Number of amino acids: Translated: 942; Mature: 942
Protein sequence:
>942_residues MQQYAIGQRWLSDTETELGLGVLIDVDERSVSILFPKSDETRVYARNNAPLSRIIFNVNDEVQDQEGNKWNVESIEDRHG VLRYNVVRTLENGEQERKALNETRIGAQIQLSKPLDRLLASQIDYKEWYDLRIEAMLMQAQMQTSPLRGLVGARVGLIPH QLYIAHEVGKRFAPRVLLADEVGLGKTIEAGLIIHQQLKTGRSERILILVPDSLQYQWMIEMRRRFNLQFSLFDLTRTAS IKEHDPELNPFLTEQCIIASVDLMVDHDDLREQALEAGFDLLVVDEAHHLMWSEEEGGNDRYDLVEELAENTAGVLLLTA TPEQLGVESHFARLRLLDPQRFSSLERFLDEEAQYQQTAQVAEVLMSDEPLTQEHLSALEGLLGHSIEDQPEQRFRAIHE LLDRHGTGRILFRNTREAIQGFPGRDCQPAPLPAPADWSKDGKLREQMWPEEAQIDGSWMQNDPRVPWLMEILRKELKHK KVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQAAAYFAEESYGAQILLCSEIGSEGRNFQFASDLILFDLP ANPDVLEQRIGRLDRIGQENRIQIHVPYLMGTAQERMFRWYNEALNIFSNISPTAQTLQENFIVELKDCLLADQGQTFED LLEEVNVQRQALEAELQAGRDRLLEYNSCRPIVAQEIVQALEDYDDNTTLPMFVKRFMSSTNIDFDEQSNGTVIIRPTDQ MQVQGLALDEEGMTATFYRDQAQMREDAQYLTLEHPFIESVMEMIRTQSFGSTNVAVLKSNALKQGSVLLEVWFKVDVVA PKSLNLPSSLPKQLIRVLLSENGQDLSEKIDPTILKPYLHHLDGNSCRQVVKARREVIEERYKQALDIAKEGLPQLQQQA KEHYGNKWQYEIDRLTYLKQFNPSIRQDEIERLQKLQKEGLSLLDGLTVTPEAIQVLVVVKP
Sequences:
>Translated_942_residues MQQYAIGQRWLSDTETELGLGVLIDVDERSVSILFPKSDETRVYARNNAPLSRIIFNVNDEVQDQEGNKWNVESIEDRHG VLRYNVVRTLENGEQERKALNETRIGAQIQLSKPLDRLLASQIDYKEWYDLRIEAMLMQAQMQTSPLRGLVGARVGLIPH QLYIAHEVGKRFAPRVLLADEVGLGKTIEAGLIIHQQLKTGRSERILILVPDSLQYQWMIEMRRRFNLQFSLFDLTRTAS IKEHDPELNPFLTEQCIIASVDLMVDHDDLREQALEAGFDLLVVDEAHHLMWSEEEGGNDRYDLVEELAENTAGVLLLTA TPEQLGVESHFARLRLLDPQRFSSLERFLDEEAQYQQTAQVAEVLMSDEPLTQEHLSALEGLLGHSIEDQPEQRFRAIHE LLDRHGTGRILFRNTREAIQGFPGRDCQPAPLPAPADWSKDGKLREQMWPEEAQIDGSWMQNDPRVPWLMEILRKELKHK KVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQAAAYFAEESYGAQILLCSEIGSEGRNFQFASDLILFDLP ANPDVLEQRIGRLDRIGQENRIQIHVPYLMGTAQERMFRWYNEALNIFSNISPTAQTLQENFIVELKDCLLADQGQTFED LLEEVNVQRQALEAELQAGRDRLLEYNSCRPIVAQEIVQALEDYDDNTTLPMFVKRFMSSTNIDFDEQSNGTVIIRPTDQ MQVQGLALDEEGMTATFYRDQAQMREDAQYLTLEHPFIESVMEMIRTQSFGSTNVAVLKSNALKQGSVLLEVWFKVDVVA PKSLNLPSSLPKQLIRVLLSENGQDLSEKIDPTILKPYLHHLDGNSCRQVVKARREVIEERYKQALDIAKEGLPQLQQQA KEHYGNKWQYEIDRLTYLKQFNPSIRQDEIERLQKLQKEGLSLLDGLTVTPEAIQVLVVVKP >Mature_942_residues MQQYAIGQRWLSDTETELGLGVLIDVDERSVSILFPKSDETRVYARNNAPLSRIIFNVNDEVQDQEGNKWNVESIEDRHG VLRYNVVRTLENGEQERKALNETRIGAQIQLSKPLDRLLASQIDYKEWYDLRIEAMLMQAQMQTSPLRGLVGARVGLIPH QLYIAHEVGKRFAPRVLLADEVGLGKTIEAGLIIHQQLKTGRSERILILVPDSLQYQWMIEMRRRFNLQFSLFDLTRTAS IKEHDPELNPFLTEQCIIASVDLMVDHDDLREQALEAGFDLLVVDEAHHLMWSEEEGGNDRYDLVEELAENTAGVLLLTA TPEQLGVESHFARLRLLDPQRFSSLERFLDEEAQYQQTAQVAEVLMSDEPLTQEHLSALEGLLGHSIEDQPEQRFRAIHE LLDRHGTGRILFRNTREAIQGFPGRDCQPAPLPAPADWSKDGKLREQMWPEEAQIDGSWMQNDPRVPWLMEILRKELKHK KVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQAAAYFAEESYGAQILLCSEIGSEGRNFQFASDLILFDLP ANPDVLEQRIGRLDRIGQENRIQIHVPYLMGTAQERMFRWYNEALNIFSNISPTAQTLQENFIVELKDCLLADQGQTFED LLEEVNVQRQALEAELQAGRDRLLEYNSCRPIVAQEIVQALEDYDDNTTLPMFVKRFMSSTNIDFDEQSNGTVIIRPTDQ MQVQGLALDEEGMTATFYRDQAQMREDAQYLTLEHPFIESVMEMIRTQSFGSTNVAVLKSNALKQGSVLLEVWFKVDVVA PKSLNLPSSLPKQLIRVLLSENGQDLSEKIDPTILKPYLHHLDGNSCRQVVKARREVIEERYKQALDIAKEGLPQLQQQA KEHYGNKWQYEIDRLTYLKQFNPSIRQDEIERLQKLQKEGLSLLDGLTVTPEAIQVLVVVKP
Specific function: Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on
COG id: COG0553
COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1786245, Length=970, Percent_Identity=42.2680412371134, Blast_Score=756, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR022737 - InterPro: IPR000330 [H]
Pfam domain/function: PF00271 Helicase_C; PF12137 RapA_C; PF00176 SNF2_N [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 107870; Mature: 107870
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQYAIGQRWLSDTETELGLGVLIDVDERSVSILFPKSDETRVYARNNAPLSRIIFNVND CCCCHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCEEEEECCCCHHHEEECCCC EVQDQEGNKWNVESIEDRHGVLRYNVVRTLENGEQERKALNETRIGAQIQLSKPLDRLLA CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCHHHHHHH SQIDYKEWYDLRIEAMLMQAQMQTSPLRGLVGARVGLIPHQLYIAHEVGKRFAPRVLLAD HHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEC EVGLGKTIEAGLIIHQQLKTGRSERILILVPDSLQYQWMIEMRRRFNLQFSLFDLTRTAS CCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHCC IKEHDPELNPFLTEQCIIASVDLMVDHDDLREQALEAGFDLLVVDEAHHLMWSEEEGGND CCCCCCCCCCHHHHHHHHHHHHEEECHHHHHHHHHHCCCCEEEEECHHHHEECCCCCCCC RYDLVEELAENTAGVLLLTATPEQLGVESHFARLRLLDPQRFSSLERFLDEEAQYQQTAQ HHHHHHHHHCCCCCEEEEEECHHHHCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHH VAEVLMSDEPLTQEHLSALEGLLGHSIEDQPEQRFRAIHELLDRHGTGRILFRNTREAIQ HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHC GFPGRDCQPAPLPAPADWSKDGKLREQMWPEEAQIDGSWMQNDPRVPWLMEILRKELKHK CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCC KVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQAAAYFAEESYGAQILLCSE EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC IGSEGRNFQFASDLILFDLPANPDVLEQRIGRLDRIGQENRIQIHVPYLMGTAQERMFRW CCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCHHHHHHHHH YNEALNIFSNISPTAQTLQENFIVELKDCLLADQGQTFEDLLEEVNVQRQALEAELQAGR HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCH DRLLEYNSCRPIVAQEIVQALEDYDDNTTLPMFVKRFMSSTNIDFDEQSNGTVIIRPTDQ HHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC MQVQGLALDEEGMTATFYRDQAQMREDAQYLTLEHPFIESVMEMIRTQSFGSTNVAVLKS CEEEEEEECCCCCEEEEEHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCEEEEEC NALKQGSVLLEVWFKVDVVAPKSLNLPSSLPKQLIRVLLSENGQDLSEKIDPTILKPYLH CCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHH HLDGNSCRQVVKARREVIEERYKQALDIAKEGLPQLQQQAKEHYGNKWQYEIDRLTYLKQ HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEHHHHHHHHH FNPSIRQDEIERLQKLQKEGLSLLDGLTVTPEAIQVLVVVKP CCCCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEEECC >Mature Secondary Structure MQQYAIGQRWLSDTETELGLGVLIDVDERSVSILFPKSDETRVYARNNAPLSRIIFNVND CCCCHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCEEEEECCCCHHHEEECCCC EVQDQEGNKWNVESIEDRHGVLRYNVVRTLENGEQERKALNETRIGAQIQLSKPLDRLLA CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCHHHHHHH SQIDYKEWYDLRIEAMLMQAQMQTSPLRGLVGARVGLIPHQLYIAHEVGKRFAPRVLLAD HHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEC EVGLGKTIEAGLIIHQQLKTGRSERILILVPDSLQYQWMIEMRRRFNLQFSLFDLTRTAS CCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHCC IKEHDPELNPFLTEQCIIASVDLMVDHDDLREQALEAGFDLLVVDEAHHLMWSEEEGGND CCCCCCCCCCHHHHHHHHHHHHEEECHHHHHHHHHHCCCCEEEEECHHHHEECCCCCCCC RYDLVEELAENTAGVLLLTATPEQLGVESHFARLRLLDPQRFSSLERFLDEEAQYQQTAQ HHHHHHHHHCCCCCEEEEEECHHHHCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHH VAEVLMSDEPLTQEHLSALEGLLGHSIEDQPEQRFRAIHELLDRHGTGRILFRNTREAIQ HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHC GFPGRDCQPAPLPAPADWSKDGKLREQMWPEEAQIDGSWMQNDPRVPWLMEILRKELKHK CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCC KVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQAAAYFAEESYGAQILLCSE EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC IGSEGRNFQFASDLILFDLPANPDVLEQRIGRLDRIGQENRIQIHVPYLMGTAQERMFRW CCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCHHHHHHHHH YNEALNIFSNISPTAQTLQENFIVELKDCLLADQGQTFEDLLEEVNVQRQALEAELQAGR HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCH DRLLEYNSCRPIVAQEIVQALEDYDDNTTLPMFVKRFMSSTNIDFDEQSNGTVIIRPTDQ HHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC MQVQGLALDEEGMTATFYRDQAQMREDAQYLTLEHPFIESVMEMIRTQSFGSTNVAVLKS CEEEEEEECCCCCEEEEEHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCEEEEEC NALKQGSVLLEVWFKVDVVAPKSLNLPSSLPKQLIRVLLSENGQDLSEKIDPTILKPYLH CCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHH HLDGNSCRQVVKARREVIEERYKQALDIAKEGLPQLQQQAKEHYGNKWQYEIDRLTYLKQ HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEHHHHHHHHH FNPSIRQDEIERLQKLQKEGLSLLDGLTVTPEAIQVLVVVKP CCCCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA