Click here to switch to the map view.

The map label for this gene is rubB [H]

Identifier: 213158127

GI number: 213158127

Start: 2920850

End: 2922205

Strand: Reverse

Name: rubB [H]

Synonym: AB57_2839

Alternate gene names: 213158127

Gene position: 2922205-2920850 (Counterclockwise)

Preceding gene: 213158128

Following gene: 213158126

Centisome position: 72.14

GC content: 41.96

Gene sequence:

>1356_bases
ATGAGAAAGTGGTTATGTATTGTCTGTGGCTGGATCTATGATGAAGCTAAAGGCTGGCCTGCTGATGGGATAGCACCAGG
GACAAAATGGGAAGACATCCCAGATGACTGGATGTGTCCAGAGTGTCAGGTGGGTAAAGCTGATTTCGAAATGCTTGATA
TCACAGATATTGAAGAGGACGAAATCCCTCAAGTAGCAGCCGCTGCAGTTATTGAACCAGTTGTTATTATTGGTAGTGGC
CATGCTGGCTATCATGTAGCTTCGAATTTACGTGCACAATCTCCAGACTTGTCTATTACCGTATTTACTGCTGATGATGG
CGCCTTATATAGCAAACCAGCTTTATCTAATGCACTAGCATTAGGTAAAGACGGAGATAGTCTAGTTCGTGAATCTGCTC
TTAGTTGGGAGCAACGTTTAAATATCCGTGTTTATCCACATACGAAAGTGACTCATATTGACCGCGCCAATAAAAAGCTT
CAAACCACTATTGGTGATTACCCTTATGGAAAATTGGTGATAGCCACTGGTGCCACGCCAATTGTTATACCTATTGAAGG
TGATTCGTCTGCAACATTAAGCGTAAATGATCTGGCAGATTACCGTCGTTTCCGTCAGCAATTGGCAGATAAAAAACATG
TCACCATTCTTGGTGATGGTCTCATCGGCTGTGAATTTGCTAATGATTTAGCTGCACATGGGATTAAAGTTACTGTCATC
GGACTTGGTAAATGGGCAATGGAACGTCTTATTCCAGAACCTTTAGGTCATGCTCTACAAAATGCGCTTAGCCAATTAGG
AGTAGAGTGGAAATTACAAAATAGTATCCGCTCTATTCAATCTGCAAATGGTTGTTATCAGTTAACACTACAAGATGGCC
AAATAATTGAAACTGATTTGGTATTAAGTGCAGTAGGTTTAAGGCCAAATATTGCTCTTGCTCAAGAAGCAGGTCTAGAG
ACAGCACGTGGTATCTGTACTGGTCTGGATCATCGTAGTAGTGATCCTTCAATTTTTGCTTTAGGTGACTGTGCAGAAGT
GAACGGACAATGGGCACCATATATCAATCCAATCACTCAAGCACTACCTGCTTTAGTTAATAATCTTTTAGGTCAATCAA
CTGACGCAGATCTGAAAGCGACCCCAGTTTTAGTAAAAACCCCAATTTTGCCACTTTCTGTATTGCCAGCAATGGAAACA
GGTGAGTGGAGAGTGGAAGAGCACGATGGGGAGTTGGCGGCTGGTTTTTACAATGAGCAAGATAAATTAATAGGCTTTGC
CTTACTCGGTCGTCAATTACAACACCATCGTACTGAATGGCTTGAGAAATTAAATTCGTGCCCATCCACAGTTTAA

Upstream 100 bases:

>100_bases
AAAGGGCAGGAAGCCATCTACAGTTATGTTCAAACTCGCAATATCGGTATCCGTTTGAAACATAGCGTGTAATTAGTAAG
AAATAAGGGAAATAGACAAG

Downstream 100 bases:

>100_bases
GTTAAAGGAATAACAAAATGATTGCTTTACCAAATGATGATAATACTTGTGGGTGGTATGCAGCATTGCCTCCAGCCGGT
CCTGCTAAAAAGTTAATAGG

Product: rubredoxin-NAD(+) reductase

Products: NA

Alternate protein names: RdxR [H]

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MRKWLCIVCGWIYDEAKGWPADGIAPGTKWEDIPDDWMCPECQVGKADFEMLDITDIEEDEIPQVAAAAVIEPVVIIGSG
HAGYHVASNLRAQSPDLSITVFTADDGALYSKPALSNALALGKDGDSLVRESALSWEQRLNIRVYPHTKVTHIDRANKKL
QTTIGDYPYGKLVIATGATPIVIPIEGDSSATLSVNDLADYRRFRQQLADKKHVTILGDGLIGCEFANDLAAHGIKVTVI
GLGKWAMERLIPEPLGHALQNALSQLGVEWKLQNSIRSIQSANGCYQLTLQDGQIIETDLVLSAVGLRPNIALAQEAGLE
TARGICTGLDHRSSDPSIFALGDCAEVNGQWAPYINPITQALPALVNNLLGQSTDADLKATPVLVKTPILPLSVLPAMET
GEWRVEEHDGELAAGFYNEQDKLIGFALLGRQLQHHRTEWLEKLNSCPSTV

Sequences:

>Translated_451_residues
MRKWLCIVCGWIYDEAKGWPADGIAPGTKWEDIPDDWMCPECQVGKADFEMLDITDIEEDEIPQVAAAAVIEPVVIIGSG
HAGYHVASNLRAQSPDLSITVFTADDGALYSKPALSNALALGKDGDSLVRESALSWEQRLNIRVYPHTKVTHIDRANKKL
QTTIGDYPYGKLVIATGATPIVIPIEGDSSATLSVNDLADYRRFRQQLADKKHVTILGDGLIGCEFANDLAAHGIKVTVI
GLGKWAMERLIPEPLGHALQNALSQLGVEWKLQNSIRSIQSANGCYQLTLQDGQIIETDLVLSAVGLRPNIALAQEAGLE
TARGICTGLDHRSSDPSIFALGDCAEVNGQWAPYINPITQALPALVNNLLGQSTDADLKATPVLVKTPILPLSVLPAMET
GEWRVEEHDGELAAGFYNEQDKLIGFALLGRQLQHHRTEWLEKLNSCPSTV
>Mature_451_residues
MRKWLCIVCGWIYDEAKGWPADGIAPGTKWEDIPDDWMCPECQVGKADFEMLDITDIEEDEIPQVAAAAVIEPVVIIGSG
HAGYHVASNLRAQSPDLSITVFTADDGALYSKPALSNALALGKDGDSLVRESALSWEQRLNIRVYPHTKVTHIDRANKKL
QTTIGDYPYGKLVIATGATPIVIPIEGDSSATLSVNDLADYRRFRQQLADKKHVTILGDGLIGCEFANDLAAHGIKVTVI
GLGKWAMERLIPEPLGHALQNALSQLGVEWKLQNSIRSIQSANGCYQLTLQDGQIIETDLVLSAVGLRPNIALAQEAGLE
TARGICTGLDHRSSDPSIFALGDCAEVNGQWAPYINPITQALPALVNNLLGQSTDADLKATPVLVKTPILPLSVLPAMET
GEWRVEEHDGELAAGFYNEQDKLIGFALLGRQLQHHRTEWLEKLNSCPSTV

Specific function: Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI4757732, Length=297, Percent_Identity=26.9360269360269, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI22202629, Length=324, Percent_Identity=26.5432098765432, Blast_Score=83, Evalue=5e-16,
Organism=Escherichia coli, GI1789065, Length=360, Percent_Identity=36.6666666666667, Blast_Score=221, Evalue=5e-59,
Organism=Escherichia coli, GI1788892, Length=276, Percent_Identity=31.1594202898551, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789765, Length=319, Percent_Identity=26.9592476489028, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1789064, Length=47, Percent_Identity=57.4468085106383, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787352, Length=246, Percent_Identity=26.4227642276423, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI32564386, Length=283, Percent_Identity=26.8551236749117, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17559934, Length=284, Percent_Identity=24.6478873239437, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.18.1.1 [H]

Molecular weight: Translated: 49005; Mature: 49005

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS50903 RUBREDOXIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKWLCIVCGWIYDEAKGWPADGIAPGTKWEDIPDDWMCPECQVGKADFEMLDITDIEED
CCCEEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
EIPQVAAAAVIEPVVIIGSGHAGYHVASNLRAQSPDLSITVFTADDGALYSKPALSNALA
CCHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCCCCEEEEEECCCCCEECCCCHHHHEE
LGKDGDSLVRESALSWEQRLNIRVYPHTKVTHIDRANKKLQTTIGDYPYGKLVIATGATP
ECCCCHHHHHHHHHCHHHCCCEEEECCCCEEECHHCCCHHHHHCCCCCCCEEEEEECCCE
IVIPIEGDSSATLSVNDLADYRRFRQQLADKKHVTILGDGLIGCEFANDLAAHGIKVTVI
EEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCCEEEEEE
GLGKWAMERLIPEPLGHALQNALSQLGVEWKLQNSIRSIQSANGCYQLTLQDGQIIETDL
ECCHHHHHHHCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCEEEEEECCCCEEEHHH
VLSAVGLRPNIALAQEAGLETARGICTGLDHRSSDPSIFALGDCAEVNGQWAPYINPITQ
HHHHHCCCCCEEHHHHCCCHHHHHHHHCCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHH
ALPALVNNLLGQSTDADLKATPVLVKTPILPLSVLPAMETGEWRVEEHDGELAAGFYNEQ
HHHHHHHHHHCCCCCCCCEECCEEEECCCCCHHHCCCCCCCCEEEEECCCCEEECEECCC
DKLIGFALLGRQLQHHRTEWLEKLNSCPSTV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRKWLCIVCGWIYDEAKGWPADGIAPGTKWEDIPDDWMCPECQVGKADFEMLDITDIEED
CCCEEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
EIPQVAAAAVIEPVVIIGSGHAGYHVASNLRAQSPDLSITVFTADDGALYSKPALSNALA
CCHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCCCCEEEEEECCCCCEECCCCHHHHEE
LGKDGDSLVRESALSWEQRLNIRVYPHTKVTHIDRANKKLQTTIGDYPYGKLVIATGATP
ECCCCHHHHHHHHHCHHHCCCEEEECCCCEEECHHCCCHHHHHCCCCCCCEEEEEECCCE
IVIPIEGDSSATLSVNDLADYRRFRQQLADKKHVTILGDGLIGCEFANDLAAHGIKVTVI
EEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCCEEEEEE
GLGKWAMERLIPEPLGHALQNALSQLGVEWKLQNSIRSIQSANGCYQLTLQDGQIIETDL
ECCHHHHHHHCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCEEEEEECCCCEEEHHH
VLSAVGLRPNIALAQEAGLETARGICTGLDHRSSDPSIFALGDCAEVNGQWAPYINPITQ
HHHHHCCCCCEEHHHHCCCHHHHHHHHCCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHH
ALPALVNNLLGQSTDADLKATPVLVKTPILPLSVLPAMETGEWRVEEHDGELAAGFYNEQ
HHHHHHHHHHCCCCCCCCEECCEEEECCCCCHHHCCCCCCCCEEEEECCCCEEECEECCC
DKLIGFALLGRQLQHHRTEWLEKLNSCPSTV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA