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The map label for this gene is sodB [H]

Identifier: 213158065

GI number: 213158065

Start: 2847457

End: 2848083

Strand: Direct

Name: sodB [H]

Synonym: AB57_2777

Alternate gene names: 213158065

Gene position: 2847457-2848083 (Clockwise)

Preceding gene: 213158064

Following gene: 213158066

Centisome position: 70.3

GC content: 39.39

Gene sequence:

>627_bases
ATGACAACCATTACTTTACCTGCACTTCCATATGGCTATGATGATTTAGCGCCACATATCAGTAAAGAAACTTTAGAATA
CCATCACGACAAACACCACAATACCTATGTTGTTAACTTAAACAACTTAATCAAAGGTACTGACCTTGAAGGTAAAACTT
TAGAAGAAATCATTAAAGCAACTGCTGGTGATGCATCTAAAGCTGGTATTTTCAACAATGCTGCTCAAGTTTGGAACCAC
ACTTTCTACTGGAACAGCATGAAGCCAAACGGTGGTGGTAAGCCTACTGGCGCAATCGCTGCTAAAATTGACGAAGCTTT
TGGTAGCTACGAAAAATTTGCAGAAGAATTTACTGCTGCTGCAACAACTCAATTCGGTTCAGGTTGGGCTTGGTTAGTTG
CTGATGAAGTAAACGGTAAACTTTCTATTACTAAAACTTCTAATGCAGACACTCCACTTGCACATGGTCAAATTGCTGTA
TTAACAATTGACGTATGGGAACACGCTTACTACATCGATTTCCGTAACTTACGTCCTAAATACATCGCAACTTTCTTAGA
AAACCTTGTGAACTGGGACTATGCAAATGCAAAACTTGCAGGCCAACCAGCTGGTGTAGAGAAATAA

Upstream 100 bases:

>100_bases
TATTGTGTATAGTTCTTTAAAAGGCTGCCCTATTGCATCCAGAATCATTTACAATAGAGCCACTTAATTGTATAACCCAG
CAAATGCAAGGAATAGGAAC

Downstream 100 bases:

>100_bases
TTTTATTTCTTTATAAAAACCACCCTGTTTTGGGTTGGTTTTTTTATTTTTAGTACAACAAAAGCATATTAATCAAGCAA
ACGATTCATTTTCTTTAATA

Product: superoxide dismutase (Fe)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTTITLPALPYGYDDLAPHISKETLEYHHDKHHNTYVVNLNNLIKGTDLEGKTLEEIIKATAGDASKAGIFNNAAQVWNH
TFYWNSMKPNGGGKPTGAIAAKIDEAFGSYEKFAEEFTAAATTQFGSGWAWLVADEVNGKLSITKTSNADTPLAHGQIAV
LTIDVWEHAYYIDFRNLRPKYIATFLENLVNWDYANAKLAGQPAGVEK

Sequences:

>Translated_208_residues
MTTITLPALPYGYDDLAPHISKETLEYHHDKHHNTYVVNLNNLIKGTDLEGKTLEEIIKATAGDASKAGIFNNAAQVWNH
TFYWNSMKPNGGGKPTGAIAAKIDEAFGSYEKFAEEFTAAATTQFGSGWAWLVADEVNGKLSITKTSNADTPLAHGQIAV
LTIDVWEHAYYIDFRNLRPKYIATFLENLVNWDYANAKLAGQPAGVEK
>Mature_207_residues
TTITLPALPYGYDDLAPHISKETLEYHHDKHHNTYVVNLNNLIKGTDLEGKTLEEIIKATAGDASKAGIFNNAAQVWNHT
FYWNSMKPNGGGKPTGAIAAKIDEAFGSYEKFAEEFTAAATTQFGSGWAWLVADEVNGKLSITKTSNADTPLAHGQIAVL
TIDVWEHAYYIDFRNLRPKYIATFLENLVNWDYANAKLAGQPAGVEK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=193, Percent_Identity=41.4507772020725, Blast_Score=145, Evalue=2e-35,
Organism=Homo sapiens, GI67782305, Length=193, Percent_Identity=41.4507772020725, Blast_Score=145, Evalue=2e-35,
Organism=Homo sapiens, GI67782309, Length=191, Percent_Identity=35.0785340314136, Blast_Score=106, Evalue=1e-23,
Organism=Escherichia coli, GI1787946, Length=198, Percent_Identity=59.5959595959596, Blast_Score=241, Evalue=4e-65,
Organism=Escherichia coli, GI1790342, Length=209, Percent_Identity=42.5837320574163, Blast_Score=154, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=34.8258706467662, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=202, Percent_Identity=35.6435643564356, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=34.6153846153846, Blast_Score=107, Evalue=9e-25,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=37.0558375634518, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22920; Mature: 22789

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTITLPALPYGYDDLAPHISKETLEYHHDKHHNTYVVNLNNLIKGTDLEGKTLEEIIKA
CCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
TAGDASKAGIFNNAAQVWNHTFYWNSMKPNGGGKPTGAIAAKIDEAFGSYEKFAEEFTAA
HCCCCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATTQFGSGWAWLVADEVNGKLSITKTSNADTPLAHGQIAVLTIDVWEHAYYIDFRNLRPK
HHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCHH
YIATFLENLVNWDYANAKLAGQPAGVEK
HHHHHHHHHHCCCCCCCEECCCCCCCCC
>Mature Secondary Structure 
TTITLPALPYGYDDLAPHISKETLEYHHDKHHNTYVVNLNNLIKGTDLEGKTLEEIIKA
CEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
TAGDASKAGIFNNAAQVWNHTFYWNSMKPNGGGKPTGAIAAKIDEAFGSYEKFAEEFTAA
HCCCCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATTQFGSGWAWLVADEVNGKLSITKTSNADTPLAHGQIAVLTIDVWEHAYYIDFRNLRPK
HHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCHH
YIATFLENLVNWDYANAKLAGQPAGVEK
HHHHHHHHHHCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2501651 [H]