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The map label for this gene is ybfI [H]

Identifier: 213158042

GI number: 213158042

Start: 2818452

End: 2819276

Strand: Reverse

Name: ybfI [H]

Synonym: AB57_2753

Alternate gene names: 213158042

Gene position: 2819276-2818452 (Counterclockwise)

Preceding gene: 213158043

Following gene: 213158041

Centisome position: 69.6

GC content: 38.79

Gene sequence:

>825_bases
ATGCACCGGGAACAGGCTGACTACTTGCATTTGCGAGAGTTGGGCGGTTTAGAATTATTAAAAGCACATTATCACCAAAC
ACAATTTTCAAAGCATACTCATGAAGGATATTGTATTGGTGTCATTGAAGAGGGTGCACAGTCTTTTTTTAGGACGGGTC
AGCTACATGTTGCCCCTAAAGGTGACATTATTTTGGTTAATGCAGATGAAATTCACACCGGCTCATCTGCTGTCGAATCG
GGCTGGCGTTACCGTGCAATCTATCCTACACCCGAAATGCTTGCTGAAGTAAGCCAAGATTTTTTTGAGCAAGGCCATGG
GGCACCTTGGTTTCCGCAAGCTGTAATTCAGGACTTGGGATTATCTCAACAACTCTGTTTATTATTTGATTTATTAGAAC
AAAAAGACAATTTTTTGCTTAAAGAAACCATGTATTTATCAACATTAGCATGCTTAATGGTACGTCATGGTAAGTCAAGA
CACACCTTTTGTGAGTTGCCAGAAGCTTATTCAAAAGTATTAAAAGTTAAAGATTTGTTAGCTGATATGCCTGAAAAGAA
TTTTTCTTTGCAGGAATTGGCTGATATGGTCGGATTAAGTGCATGGCATTTTTTAAGACAATTTAAAAAACATGTGGGTT
TACCGCCTCATGCATGGTTAGTACAGGCGCGTTTGCAAAAAGCGAGACAATTATTAAAACAAGGCGTTCAAATTGTAATG
GTTGCACAGCAATGTGGTTTTTCTGATCAAAGCCATTTTAATCGTCATTTTAAAAAGGCGATGGGTGTTACACCAACCCA
ATATGTGGCGAGTCTTAATCTTTAA

Upstream 100 bases:

>100_bases
TAGAAAATAGGATATCCATTTCCCCATAACAGCAATTTTGTTCTATGCATCTTTTTAAAACATGCTATGTTTTTTGTAGA
TAAATAGATGAGATGTATAT

Downstream 100 bases:

>100_bases
AATTTATTTGCAGTGCTAACCACAATTTTGTTCAAGCGAAGCTGAGCTAAATACCAGAAAATCTATAAATAATAACTGTT
ATAGATGTCTAGGGATGAAT

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MHREQADYLHLRELGGLELLKAHYHQTQFSKHTHEGYCIGVIEEGAQSFFRTGQLHVAPKGDIILVNADEIHTGSSAVES
GWRYRAIYPTPEMLAEVSQDFFEQGHGAPWFPQAVIQDLGLSQQLCLLFDLLEQKDNFLLKETMYLSTLACLMVRHGKSR
HTFCELPEAYSKVLKVKDLLADMPEKNFSLQELADMVGLSAWHFLRQFKKHVGLPPHAWLVQARLQKARQLLKQGVQIVM
VAQQCGFSDQSHFNRHFKKAMGVTPTQYVASLNL

Sequences:

>Translated_274_residues
MHREQADYLHLRELGGLELLKAHYHQTQFSKHTHEGYCIGVIEEGAQSFFRTGQLHVAPKGDIILVNADEIHTGSSAVES
GWRYRAIYPTPEMLAEVSQDFFEQGHGAPWFPQAVIQDLGLSQQLCLLFDLLEQKDNFLLKETMYLSTLACLMVRHGKSR
HTFCELPEAYSKVLKVKDLLADMPEKNFSLQELADMVGLSAWHFLRQFKKHVGLPPHAWLVQARLQKARQLLKQGVQIVM
VAQQCGFSDQSHFNRHFKKAMGVTPTQYVASLNL
>Mature_274_residues
MHREQADYLHLRELGGLELLKAHYHQTQFSKHTHEGYCIGVIEEGAQSFFRTGQLHVAPKGDIILVNADEIHTGSSAVES
GWRYRAIYPTPEMLAEVSQDFFEQGHGAPWFPQAVIQDLGLSQQLCLLFDLLEQKDNFLLKETMYLSTLACLMVRHGKSR
HTFCELPEAYSKVLKVKDLLADMPEKNFSLQELADMVGLSAWHFLRQFKKHVGLPPHAWLVQARLQKARQLLKQGVQIVM
VAQQCGFSDQSHFNRHFKKAMGVTPTQYVASLNL

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI171474011, Length=266, Percent_Identity=26.3157894736842, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31255; Mature: 31255

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHREQADYLHLRELGGLELLKAHYHQTQFSKHTHEGYCIGVIEEGAQSFFRTGQLHVAPK
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCEEECCC
GDIILVNADEIHTGSSAVESGWRYRAIYPTPEMLAEVSQDFFEQGHGAPWFPQAVIQDLG
CCEEEEECCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
LSQQLCLLFDLLEQKDNFLLKETMYLSTLACLMVRHGKSRHTFCELPEAYSKVLKVKDLL
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHH
ADMPEKNFSLQELADMVGLSAWHFLRQFKKHVGLPPHAWLVQARLQKARQLLKQGVQIVM
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEE
VAQQCGFSDQSHFNRHFKKAMGVTPTQYVASLNL
HHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure
MHREQADYLHLRELGGLELLKAHYHQTQFSKHTHEGYCIGVIEEGAQSFFRTGQLHVAPK
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCEEECCC
GDIILVNADEIHTGSSAVESGWRYRAIYPTPEMLAEVSQDFFEQGHGAPWFPQAVIQDLG
CCEEEEECCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
LSQQLCLLFDLLEQKDNFLLKETMYLSTLACLMVRHGKSRHTFCELPEAYSKVLKVKDLL
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHH
ADMPEKNFSLQELADMVGLSAWHFLRQFKKHVGLPPHAWLVQARLQKARQLLKQGVQIVM
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEE
VAQQCGFSDQSHFNRHFKKAMGVTPTQYVASLNL
HHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]