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The map label for this gene is intD [C]

Identifier: 213158031

GI number: 213158031

Start: 2808601

End: 2809587

Strand: Reverse

Name: intD [C]

Synonym: AB57_2742

Alternate gene names: 213158031

Gene position: 2809587-2808601 (Counterclockwise)

Preceding gene: 213158041

Following gene: 213158020

Centisome position: 69.36

GC content: 39.72

Gene sequence:

>987_bases
ATGGCTTCATTTAGACAACGCAACAATACATGGCGAGCCGAGATAAGTGTAAACGGAATTCGCGAAAGTTCAACCTTTGA
TACAAAAGCTCAGGCTAGGGCTTGGGCATCTAAACGCGAGACTCAGTTACGCGAACAATCGCATGGCAAATTACCAGATC
ACTCTTTTTTAGAAGCTATTGAACGCTACTTAAGTGAAGTGAGTGTTAAAAAGAAAACTCATGAGAATGAAGTCAAGCGA
ATGGCTTTCTTTAAGCGTGAGTATAAAAAGCTATGTCAAAAACAATTGGCCAAAGTCACAACTGACGATTTAGTGCAATG
GCGCGACTCCCGATTAAAAGAAGTGCAGGGTGCTACTGTCCGGCGTGAAGCAAATATTTTAGCTTCTTTATTTACTGTTG
CCCGGAAAGAATGGAAGTGGATTAAAGAGTCTCCAATGGCCGACTTGACTTTACCGCCACCATCAAAGCACCGAGATAGA
CGAATTGCTCAGGATGAGATTGATAGATTATGTCTTGCAGCAAATTGGGATAACAATGTACCAGTAAACTCAACTCAGCA
AATTATAATTGCCTTTCTCTTTGCAATTGAAACGGCAATGCGTGCTGGTGAGATTGTTGGCTTGACTTGGGATCGTGTTT
ATTTAAAAGATAGATATTTAGTTTTAAATGAAACAAAGAATGGTACTAAACGAAATGTACCACTATCTAAGCGTGCAGTT
GAGTTGCTTACTTTATTAAAAGGTCTTGATAAAAAGCAGGTCTTTACTTGTAATTCCCAAAGCTTTGATACGCTTTGGCG
TAAATTAAGAGATAGATGTCAAATCACTGATTTGCATTTCCATGATACACGCCATGAGGCTTGTACACGCCTTGCAAGGA
AATTAGAAGTTTTAGACTTGGCCCGTATGATTGGGCATAAAGACTTAAGAAGCTTGATGGTCTATTACAATGCTACTGCA
AGTGAAATTGCAACGAGGCTAGATTAG

Upstream 100 bases:

>100_bases
ATCAAATGCCAAATTAGCCAATAATCTGTACTTCTATTATTTCTTATTTTTTCCTATTATTTCGGTTATCACAATTACGC
CAAGATTACGCCACAAAATT

Downstream 100 bases:

>100_bases
CCCCGTTTGCGTGGTCTTCCTTTCTTTGGCTCATCATCTGATTGTTCATTCAACCAGTTTGATAGCTCTGCCAAGTTCCA
GCGTCTTCCTTGACCGCACT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MASFRQRNNTWRAEISVNGIRESSTFDTKAQARAWASKRETQLREQSHGKLPDHSFLEAIERYLSEVSVKKKTHENEVKR
MAFFKREYKKLCQKQLAKVTTDDLVQWRDSRLKEVQGATVRREANILASLFTVARKEWKWIKESPMADLTLPPPSKHRDR
RIAQDEIDRLCLAANWDNNVPVNSTQQIIIAFLFAIETAMRAGEIVGLTWDRVYLKDRYLVLNETKNGTKRNVPLSKRAV
ELLTLLKGLDKKQVFTCNSQSFDTLWRKLRDRCQITDLHFHDTRHEACTRLARKLEVLDLARMIGHKDLRSLMVYYNATA
SEIATRLD

Sequences:

>Translated_328_residues
MASFRQRNNTWRAEISVNGIRESSTFDTKAQARAWASKRETQLREQSHGKLPDHSFLEAIERYLSEVSVKKKTHENEVKR
MAFFKREYKKLCQKQLAKVTTDDLVQWRDSRLKEVQGATVRREANILASLFTVARKEWKWIKESPMADLTLPPPSKHRDR
RIAQDEIDRLCLAANWDNNVPVNSTQQIIIAFLFAIETAMRAGEIVGLTWDRVYLKDRYLVLNETKNGTKRNVPLSKRAV
ELLTLLKGLDKKQVFTCNSQSFDTLWRKLRDRCQITDLHFHDTRHEACTRLARKLEVLDLARMIGHKDLRSLMVYYNATA
SEIATRLD
>Mature_327_residues
ASFRQRNNTWRAEISVNGIRESSTFDTKAQARAWASKRETQLREQSHGKLPDHSFLEAIERYLSEVSVKKKTHENEVKRM
AFFKREYKKLCQKQLAKVTTDDLVQWRDSRLKEVQGATVRREANILASLFTVARKEWKWIKESPMADLTLPPPSKHRDRR
IAQDEIDRLCLAANWDNNVPVNSTQQIIIAFLFAIETAMRAGEIVGLTWDRVYLKDRYLVLNETKNGTKRNVPLSKRAVE
LLTLLKGLDKKQVFTCNSQSFDTLWRKLRDRCQITDLHFHDTRHEACTRLARKLEVLDLARMIGHKDLRSLMVYYNATAS
EIATRLD

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=352, Percent_Identity=24.4318181818182, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38302; Mature: 38171

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFRQRNNTWRAEISVNGIRESSTFDTKAQARAWASKRETQLREQSHGKLPDHSFLEAI
CCCCHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ERYLSEVSVKKKTHENEVKRMAFFKREYKKLCQKQLAKVTTDDLVQWRDSRLKEVQGATV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH
RREANILASLFTVARKEWKWIKESPMADLTLPPPSKHRDRRIAQDEIDRLCLAANWDNNV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHHHHHHHEEEEECCCCCC
PVNSTQQIIIAFLFAIETAMRAGEIVGLTWDRVYLKDRYLVLNETKNGTKRNVPLSKRAV
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCEEEEECCCCCCCCCCCHHHHHH
ELLTLLKGLDKKQVFTCNSQSFDTLWRKLRDRCQITDLHFHDTRHEACTRLARKLEVLDL
HHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHH
ARMIGHKDLRSLMVYYNATASEIATRLD
HHHHCHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
ASFRQRNNTWRAEISVNGIRESSTFDTKAQARAWASKRETQLREQSHGKLPDHSFLEAI
CCCHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ERYLSEVSVKKKTHENEVKRMAFFKREYKKLCQKQLAKVTTDDLVQWRDSRLKEVQGATV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH
RREANILASLFTVARKEWKWIKESPMADLTLPPPSKHRDRRIAQDEIDRLCLAANWDNNV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHHHHHHHEEEEECCCCCC
PVNSTQQIIIAFLFAIETAMRAGEIVGLTWDRVYLKDRYLVLNETKNGTKRNVPLSKRAV
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCEEEEECCCCCCCCCCCHHHHHH
ELLTLLKGLDKKQVFTCNSQSFDTLWRKLRDRCQITDLHFHDTRHEACTRLARKLEVLDL
HHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHH
ARMIGHKDLRSLMVYYNATASEIATRLD
HHHHCHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]