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The map label for this gene is ybeY [C]

Identifier: 213157984

GI number: 213157984

Start: 3593695

End: 3594171

Strand: Direct

Name: ybeY [C]

Synonym: AB57_3479

Alternate gene names: 213157984

Gene position: 3593695-3594171 (Clockwise)

Preceding gene: 213157983

Following gene: 213158786

Centisome position: 88.72

GC content: 36.69

Gene sequence:

>477_bases
TTGAAAATCAGTTTAAGTTTACAACAAGACTTTCGATCCCCTGAGTTAGAGCTCAAACGAGCTCAACTCAAAAAAATTAT
TGAGACAACTTTACGCCACGTTGGCTATAAAGAAGATTGCGAAATTGGTATCGCATGTGTTGATTTGGAAGAAAGCCATC
AACTTAACTTGCAATATCGAGAGAAAGATAAGCCAACTAACGTTCTATCTTTTCCAAGTGATATTCCTGAAGAAGTTTTA
CCAATGCTCGACGCATTACCGTTGGGTGATTTAGTAATTTGTATTCCAGTGGTATTACAAGAGGCTTTGGAACAAAAGAA
AACTGCACAAAATCATTTTGCGCATCTTTTAGTTCATGGGGTTCTACATTTACTTGGTTATGACCATGAAACAAGTGATG
AAGATGCTGAAGAAATGGAAGGTTTAGAGATCGAAATCTTAGCTAAACTCAATATTGCCAACCCGTATCAGGAATAA

Upstream 100 bases:

>100_bases
TGCTGAAGCACGTGCTGAACGTAAAGCACGCCAAGAAGCATTAATTGCTGAAAACGATACAGCAGCAGACTTGCAACATC
AGGATGCTTAAGGATTCATT

Downstream 100 bases:

>100_bases
TCAAATTCCCTCACACGTTTAAGAACGCAGTCAGCTTCTTAATACATTTTAAAAATGTGGATATCCTAAAAGTTATCCAC
ATTTTTTCATTAATGAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKISLSLQQDFRSPELELKRAQLKKIIETTLRHVGYKEDCEIGIACVDLEESHQLNLQYREKDKPTNVLSFPSDIPEEVL
PMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQE

Sequences:

>Translated_158_residues
MKISLSLQQDFRSPELELKRAQLKKIIETTLRHVGYKEDCEIGIACVDLEESHQLNLQYREKDKPTNVLSFPSDIPEEVL
PMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQE
>Mature_158_residues
MKISLSLQQDFRSPELELKRAQLKKIIETTLRHVGYKEDCEIGIACVDLEESHQLNLQYREKDKPTNVLSFPSDIPEEVL
PMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=121, Percent_Identity=55.3719008264463, Blast_Score=112, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_ACIB3 (B7GW53)

Other databases:

- EMBL:   CP001172
- RefSeq:   YP_002324416.1
- ProteinModelPortal:   B7GW53
- SMR:   B7GW53
- GeneID:   7060527
- GenomeReviews:   CP001172_GR
- KEGG:   abb:ABBFA_000487
- HOGENOM:   HBG734136
- OMA:   HGILHIT
- ProtClustDB:   CLSK707785
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17979; Mature: 17979

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISLSLQQDFRSPELELKRAQLKKIIETTLRHVGYKEDCEIGIACVDLEESHQLNLQYR
CEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEC
EKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAHLLVHG
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQE
HHHHHCCCCCCCCCCHHHHCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MKISLSLQQDFRSPELELKRAQLKKIIETTLRHVGYKEDCEIGIACVDLEESHQLNLQYR
CEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEC
EKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAHLLVHG
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQE
HHHHHCCCCCCCCCCHHHHCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA