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The map label for this gene is ymdC [H]

Identifier: 213157948

GI number: 213157948

Start: 3553602

End: 3555227

Strand: Direct

Name: ymdC [H]

Synonym: AB57_3442

Alternate gene names: 213157948

Gene position: 3553602-3555227 (Clockwise)

Preceding gene: 213157946

Following gene: 213157950

Centisome position: 87.73

GC content: 36.41

Gene sequence:

>1626_bases
ATGGCACAATCCTTTCATTCCAAACAGCTTCAAACTCATCAACTGGCTAAAGGCTTTTTGATTAAAGCTTCTATAGTCGT
ATGTTCAAGTTTCGCTGTGGCTTTGACAGGTTGTAGCACATTACCCAAACATAGCCCTGAACCAATCCAGTACGCACGAG
ATATCGATACATCTCAAACTTCTCTTTCAAAAATTATTACGCCTTTACGTGAAAAAAATCCGAATTTAACGGGTTATCAT
CTTTTAAATGATCCCTTAGAAGCACTCGCGGCTCGCTTAAGGCTGATTGATAAAGCCGAAAAGACTTTAGATTTACAGTA
CTATATTTGGGATAACGATAAAGTCGGTGCTTTAGCTTTACATGCAATTATTCGTGCTGCTGATCGTGGTGTTAAAGTAC
GTTTATTAATTGACGATAATAATGCTAAAAAGATGGAAGGCGTGTTACTTGCGCTTTCTCAACATAAAAATATTGAAGTT
AAATTATTTAATCCCTACCGTTTCCGCAAATATCGCGCGATGGATATGATTTTAGACTTAAAACGTATCAATCGTCGTAT
GCATAACAAGAGCTTTATTGCTGATAATCAGGTTGCGCTTATTGGTGGGCGCAATATGACAAATCAGTATTACAACGTCA
GCGACAGTTATCAATTTTCTGACGTCGATGTCATGTTGGTTGGTGCTGCCGTTGATGATATCGTGAATTCTTTTGATGAC
TACTGGAATCATGAATATGCATATTCAGTCCAAAGTATCGTCAGTGCTCAACAACACCGTTTGCGCTATGAAAGCTTAAA
ACAACAACTTGATGCTCATTATCAACAAGCCACCGTTCAGAACTTCCTTGACTTAACCTCTAGATCACATGCTTTTGATA
AATGGTTAGACAGTAATATTAAATTTGATTGGGTTAAAGCAGAGGTTGTGAAAGACTCACCTGATAAAATTAGATCAAAA
GCGAAAAAAGAAGAACATTTAAATTTCCAATTGATTAACCATTTGGAAAAACCAGAAAGCAATGTTGACCTGATTTCGGC
TTATTTTATTCCAGAAAAGCAAGGCGCTAAAATTTTAAGTACGCTTGCTAAAGAAGGTGTAGAAGTTCGAGTTTTAACAA
ACTCATTCAAAGCAAATGACGTAGCTGTTGTTCATGCGTTTTATGGAAAATATCGTAAAGAACTTTTGAAAAACGGCGTT
CAACTTTATGAGTTTTTACCAACTCCAGATAAACGCGATTTAAATAAAAATACGGATGAGCTGGCAACTAAAGCGAAAGT
AAACATGAAAGGTTTAAGCCGCTCAAGTTTACACACCAAACTTATGGCATTAGATGAACAGGTTTTTATTGGTTCATTTA
ACTTTGACCCACGTTCGGCGTATTTAAATACTGAAATTGGCGTAATTTTAGATAGTCCATCACTGGCTAAAACAATTCAC
CATACGATGGATGAAAACTTAAACAAATATGCTTATAAATTAAAGCTCGACCCAGACAATCATATTTACTGGCAACAGGA
AACTCCAAAAGGCCCTATAATTTATAAAAAAGAACCAGAAATGAAATGGTGGCAAAAGGCAGGCATGAAACTACTATCAT
GGCTGCCACTCGAAGGTTTTATGTAA

Upstream 100 bases:

>100_bases
TCTCGACTTATCTTATATTGATTGCTAGTAATCAAATTCAATATTTATCTTTCAATATGCACGAATTATACTCTAGCTCA
CCTTATCGTATGTATTGATT

Downstream 100 bases:

>100_bases
TTAACTTTTTGGCTTAAGTACTTTTTTATGTAATTGAGCCAATCCTTCAACCATTTTTTCTTGCACTTCTTGAGTCAAAC
TTTTTACATCATGGCCTTCT

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 540

Protein sequence:

>541_residues
MAQSFHSKQLQTHQLAKGFLIKASIVVCSSFAVALTGCSTLPKHSPEPIQYARDIDTSQTSLSKIITPLREKNPNLTGYH
LLNDPLEALAARLRLIDKAEKTLDLQYYIWDNDKVGALALHAIIRAADRGVKVRLLIDDNNAKKMEGVLLALSQHKNIEV
KLFNPYRFRKYRAMDMILDLKRINRRMHNKSFIADNQVALIGGRNMTNQYYNVSDSYQFSDVDVMLVGAAVDDIVNSFDD
YWNHEYAYSVQSIVSAQQHRLRYESLKQQLDAHYQQATVQNFLDLTSRSHAFDKWLDSNIKFDWVKAEVVKDSPDKIRSK
AKKEEHLNFQLINHLEKPESNVDLISAYFIPEKQGAKILSTLAKEGVEVRVLTNSFKANDVAVVHAFYGKYRKELLKNGV
QLYEFLPTPDKRDLNKNTDELATKAKVNMKGLSRSSLHTKLMALDEQVFIGSFNFDPRSAYLNTEIGVILDSPSLAKTIH
HTMDENLNKYAYKLKLDPDNHIYWQQETPKGPIIYKKEPEMKWWQKAGMKLLSWLPLEGFM

Sequences:

>Translated_541_residues
MAQSFHSKQLQTHQLAKGFLIKASIVVCSSFAVALTGCSTLPKHSPEPIQYARDIDTSQTSLSKIITPLREKNPNLTGYH
LLNDPLEALAARLRLIDKAEKTLDLQYYIWDNDKVGALALHAIIRAADRGVKVRLLIDDNNAKKMEGVLLALSQHKNIEV
KLFNPYRFRKYRAMDMILDLKRINRRMHNKSFIADNQVALIGGRNMTNQYYNVSDSYQFSDVDVMLVGAAVDDIVNSFDD
YWNHEYAYSVQSIVSAQQHRLRYESLKQQLDAHYQQATVQNFLDLTSRSHAFDKWLDSNIKFDWVKAEVVKDSPDKIRSK
AKKEEHLNFQLINHLEKPESNVDLISAYFIPEKQGAKILSTLAKEGVEVRVLTNSFKANDVAVVHAFYGKYRKELLKNGV
QLYEFLPTPDKRDLNKNTDELATKAKVNMKGLSRSSLHTKLMALDEQVFIGSFNFDPRSAYLNTEIGVILDSPSLAKTIH
HTMDENLNKYAYKLKLDPDNHIYWQQETPKGPIIYKKEPEMKWWQKAGMKLLSWLPLEGFM
>Mature_540_residues
AQSFHSKQLQTHQLAKGFLIKASIVVCSSFAVALTGCSTLPKHSPEPIQYARDIDTSQTSLSKIITPLREKNPNLTGYHL
LNDPLEALAARLRLIDKAEKTLDLQYYIWDNDKVGALALHAIIRAADRGVKVRLLIDDNNAKKMEGVLLALSQHKNIEVK
LFNPYRFRKYRAMDMILDLKRINRRMHNKSFIADNQVALIGGRNMTNQYYNVSDSYQFSDVDVMLVGAAVDDIVNSFDDY
WNHEYAYSVQSIVSAQQHRLRYESLKQQLDAHYQQATVQNFLDLTSRSHAFDKWLDSNIKFDWVKAEVVKDSPDKIRSKA
KKEEHLNFQLINHLEKPESNVDLISAYFIPEKQGAKILSTLAKEGVEVRVLTNSFKANDVAVVHAFYGKYRKELLKNGVQ
LYEFLPTPDKRDLNKNTDELATKAKVNMKGLSRSSLHTKLMALDEQVFIGSFNFDPRSAYLNTEIGVILDSPSLAKTIHH
TMDENLNKYAYKLKLDPDNHIYWQQETPKGPIIYKKEPEMKWWQKAGMKLLSWLPLEGFM

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=482, Percent_Identity=38.5892116182573, Blast_Score=341, Evalue=7e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62142; Mature: 62011

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQSFHSKQLQTHQLAKGFLIKASIVVCSSFAVALTGCSTLPKHSPEPIQYARDIDTSQT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHH
SLSKIITPLREKNPNLTGYHLLNDPLEALAARLRLIDKAEKTLDLQYYIWDNDKVGALAL
HHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHH
HAIIRAADRGVKVRLLIDDNNAKKMEGVLLALSQHKNIEVKLFNPYRFRKYRAMDMILDL
HHHHHHHCCCEEEEEEEECCCCHHHHHHEEEEECCCCEEEEEECCHHHHHHHHHHHHHHH
KRINRRMHNKSFIADNQVALIGGRNMTNQYYNVSDSYQFSDVDVMLVGAAVDDIVNSFDD
HHHHHHHCCCCEECCCCEEEEECCCCCCCCCCCCCCCEECCCEEEEEHHHHHHHHHHHHH
YWNHEYAYSVQSIVSAQQHRLRYESLKQQLDAHYQQATVQNFLDLTSRSHAFDKWLDSNI
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
KFDWVKAEVVKDSPDKIRSKAKKEEHLNFQLINHLEKPESNVDLISAYFIPEKQGAKILS
EEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHH
TLAKEGVEVRVLTNSFKANDVAVVHAFYGKYRKELLKNGVQLYEFLPTPDKRDLNKNTDE
HHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHH
LATKAKVNMKGLSRSSLHTKLMALDEQVFIGSFNFDPRSAYLNTEIGVILDSPSLAKTIH
HHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCEEEEECCCHHHHHHH
HTMDENLNKYAYKLKLDPDNHIYWQQETPKGPIIYKKEPEMKWWQKAGMKLLSWLPLEGF
HHHHCCCCEEEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCC
M
C
>Mature Secondary Structure 
AQSFHSKQLQTHQLAKGFLIKASIVVCSSFAVALTGCSTLPKHSPEPIQYARDIDTSQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHH
SLSKIITPLREKNPNLTGYHLLNDPLEALAARLRLIDKAEKTLDLQYYIWDNDKVGALAL
HHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHH
HAIIRAADRGVKVRLLIDDNNAKKMEGVLLALSQHKNIEVKLFNPYRFRKYRAMDMILDL
HHHHHHHCCCEEEEEEEECCCCHHHHHHEEEEECCCCEEEEEECCHHHHHHHHHHHHHHH
KRINRRMHNKSFIADNQVALIGGRNMTNQYYNVSDSYQFSDVDVMLVGAAVDDIVNSFDD
HHHHHHHCCCCEECCCCEEEEECCCCCCCCCCCCCCCEECCCEEEEEHHHHHHHHHHHHH
YWNHEYAYSVQSIVSAQQHRLRYESLKQQLDAHYQQATVQNFLDLTSRSHAFDKWLDSNI
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
KFDWVKAEVVKDSPDKIRSKAKKEEHLNFQLINHLEKPESNVDLISAYFIPEKQGAKILS
EEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHH
TLAKEGVEVRVLTNSFKANDVAVVHAFYGKYRKELLKNGVQLYEFLPTPDKRDLNKNTDE
HHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHH
LATKAKVNMKGLSRSSLHTKLMALDEQVFIGSFNFDPRSAYLNTEIGVILDSPSLAKTIH
HHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCEEEEECCCHHHHHHH
HTMDENLNKYAYKLKLDPDNHIYWQQETPKGPIIYKKEPEMKWWQKAGMKLLSWLPLEGF
HHHHCCCCEEEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCC
M
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]