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The map label for this gene is yfdE [H]

Identifier: 213157866

GI number: 213157866

Start: 3458309

End: 3459427

Strand: Reverse

Name: yfdE [H]

Synonym: AB57_3354

Alternate gene names: 213157866

Gene position: 3459427-3458309 (Counterclockwise)

Preceding gene: 213157872

Following gene: 213157865

Centisome position: 85.41

GC content: 43.43

Gene sequence:

>1119_bases
ATGACGACTGCATTAAATGGACTTAAAGTTCTCGATTTCTCGACGCTCTTACCTGGACCTTTCGCCACAATGTATTTAGC
CGATATGGGGGCAGAAGTCATCCATATTGAATCTCCATCACGTCCAGACCTCATTCGGATTATGCCGCCCTATGCAAATG
GGCAGGCGACTGCACATAGTTATCTAAACCGAAATAAGCAGTCGATTGTTCTCGACTTAAAAGATGCTGCAAGTATTGAT
CTGATTAAAGACAAGATTTCTGAGTTTGATGTTGTGATTGAGCAGTTTCGGCCAGATGTCATGCGCCGTTTAGGGCTGGA
CTATGCCACCCTTGCAGAAATTAACCCGCGTTTAATTTATTGTTCAATTACAGGTTATGGCCAAACTGGAAGTTATAAAG
ACCGGGCTGGGCACGACATTAATTATTTAGCTTTAGCTGGTATTGCTGGGTATAGCGGCCGACAAGATAGCGGTCCGCCA
CCGCTTGGTATTCAGGTTGCCGATATTGCTGGTGGTTCATTACATGCAGTCATTGCGATCTTGGCTGCTGTAGTTGAACG
CAGCCGTAGCGGTATAGGTCAATATATTGATATTTCCATGACGGACTGTGTTGCGAGTCTGAATAGCATGGCAGCTTCTG
CCACACTTGCTGCACAAGTTGAACAGGCTCCCGAGCAGGGGATGCTCAATGGGGGGATTTTCTATGACTATTATATGACG
CAAGATGGCCGTTATCTTTCTATCGGTAGCCTTGAACCACAATTTATGGCAGGTTTGTCTGCGGCATTAGACTTACCTGT
GTTATTACAAAAAGGTGCGTCATTAGATGAGCAAGATCGACAAGAAGTTAAGCAAGCCATTCAAGAAAAAATTAAAGCCA
AAACATTCAAAGAATGGCATGAAATTTTTGCAAATCTCGATGTTTGTGTAGAACCCGTATTGAGTTTAAGTGAGGCTTTA
AATTCACCGTTAGCACAACAACGTGGATGGATTGTGAATGTTCCTTTGCAAAATAATACGCCAGATACAGAACCACAAAT
TGCATGCCCAATTAAGTTTTCACGTTCGCAAATGAGATATTCCTTTGTAGGTCAAAAACTTGGCGAAGGGCAGTGGTGA

Upstream 100 bases:

>100_bases
TGCCGAAATGATCAAGGTAAATGGCTGAACATGACATTGTTTTAGAATATTTGCTTAACTAATATAAAAGAAAATTCGAA
TAATAGTGGTTAAAAAAACG

Downstream 100 bases:

>100_bases
GGTTAAGGGGACTATTTCTTATACAGTATGTATTGAAATTATTATCTGAATAATCAATTGATTAACATTTTGAATAATTT
CTTTACATAAAATTAGCGTA

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MTTALNGLKVLDFSTLLPGPFATMYLADMGAEVIHIESPSRPDLIRIMPPYANGQATAHSYLNRNKQSIVLDLKDAASID
LIKDKISEFDVVIEQFRPDVMRRLGLDYATLAEINPRLIYCSITGYGQTGSYKDRAGHDINYLALAGIAGYSGRQDSGPP
PLGIQVADIAGGSLHAVIAILAAVVERSRSGIGQYIDISMTDCVASLNSMAASATLAAQVEQAPEQGMLNGGIFYDYYMT
QDGRYLSIGSLEPQFMAGLSAALDLPVLLQKGASLDEQDRQEVKQAIQEKIKAKTFKEWHEIFANLDVCVEPVLSLSEAL
NSPLAQQRGWIVNVPLQNNTPDTEPQIACPIKFSRSQMRYSFVGQKLGEGQW

Sequences:

>Translated_372_residues
MTTALNGLKVLDFSTLLPGPFATMYLADMGAEVIHIESPSRPDLIRIMPPYANGQATAHSYLNRNKQSIVLDLKDAASID
LIKDKISEFDVVIEQFRPDVMRRLGLDYATLAEINPRLIYCSITGYGQTGSYKDRAGHDINYLALAGIAGYSGRQDSGPP
PLGIQVADIAGGSLHAVIAILAAVVERSRSGIGQYIDISMTDCVASLNSMAASATLAAQVEQAPEQGMLNGGIFYDYYMT
QDGRYLSIGSLEPQFMAGLSAALDLPVLLQKGASLDEQDRQEVKQAIQEKIKAKTFKEWHEIFANLDVCVEPVLSLSEAL
NSPLAQQRGWIVNVPLQNNTPDTEPQIACPIKFSRSQMRYSFVGQKLGEGQW
>Mature_371_residues
TTALNGLKVLDFSTLLPGPFATMYLADMGAEVIHIESPSRPDLIRIMPPYANGQATAHSYLNRNKQSIVLDLKDAASIDL
IKDKISEFDVVIEQFRPDVMRRLGLDYATLAEINPRLIYCSITGYGQTGSYKDRAGHDINYLALAGIAGYSGRQDSGPPP
LGIQVADIAGGSLHAVIAILAAVVERSRSGIGQYIDISMTDCVASLNSMAASATLAAQVEQAPEQGMLNGGIFYDYYMTQ
DGRYLSIGSLEPQFMAGLSAALDLPVLLQKGASLDEQDRQEVKQAIQEKIKAKTFKEWHEIFANLDVCVEPVLSLSEALN
SPLAQQRGWIVNVPLQNNTPDTEPQIACPIKFSRSQMRYSFVGQKLGEGQW

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=346, Percent_Identity=37.8612716763006, Blast_Score=212, Evalue=6e-55,
Organism=Homo sapiens, GI42794625, Length=346, Percent_Identity=37.8612716763006, Blast_Score=212, Evalue=6e-55,
Organism=Homo sapiens, GI300863128, Length=337, Percent_Identity=33.2344213649852, Blast_Score=188, Evalue=7e-48,
Organism=Homo sapiens, GI300863124, Length=326, Percent_Identity=34.0490797546012, Blast_Score=186, Evalue=2e-47,
Organism=Homo sapiens, GI266458393, Length=270, Percent_Identity=40, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI266458397, Length=255, Percent_Identity=40.7843137254902, Blast_Score=179, Evalue=4e-45,
Organism=Homo sapiens, GI300863126, Length=336, Percent_Identity=29.1666666666667, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI13376042, Length=326, Percent_Identity=30.3680981595092, Blast_Score=146, Evalue=3e-35,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=43.448275862069, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=43.448275862069, Blast_Score=113, Evalue=2e-25,
Organism=Escherichia coli, GI87082093, Length=335, Percent_Identity=33.134328358209, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1788717, Length=395, Percent_Identity=28.3544303797468, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1786222, Length=333, Percent_Identity=24.3243243243243, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115535051, Length=322, Percent_Identity=32.2981366459627, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI32564160, Length=347, Percent_Identity=31.4121037463977, Blast_Score=160, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24585488, Length=316, Percent_Identity=37.9746835443038, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24648431, Length=361, Percent_Identity=32.409972299169, Blast_Score=168, Evalue=6e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40577; Mature: 40446

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTALNGLKVLDFSTLLPGPFATMYLADMGAEVIHIESPSRPDLIRIMPPYANGQATAHS
CCCCCCCEEEEEHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCHHHHH
YLNRNKQSIVLDLKDAASIDLIKDKISEFDVVIEQFRPDVMRRLGLDYATLAEINPRLIY
HHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHCCCCEEEE
CSITGYGQTGSYKDRAGHDINYLALAGIAGYSGRQDSGPPPLGIQVADIAGGSLHAVIAI
EEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHH
LAAVVERSRSGIGQYIDISMTDCVASLNSMAASATLAAQVEQAPEQGMLNGGIFYDYYMT
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEE
QDGRYLSIGSLEPQFMAGLSAALDLPVLLQKGASLDEQDRQEVKQAIQEKIKAKTFKEWH
CCCCEEEECCCCHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EIFANLDVCVEPVLSLSEALNSPLAQQRGWIVNVPLQNNTPDTEPQIACPIKFSRSQMRY
HHHHCHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCCCCCCCCCEEECEEECHHHHHH
SFVGQKLGEGQW
HHHHHHHCCCCC
>Mature Secondary Structure 
TTALNGLKVLDFSTLLPGPFATMYLADMGAEVIHIESPSRPDLIRIMPPYANGQATAHS
CCCCCCEEEEEHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCHHHHH
YLNRNKQSIVLDLKDAASIDLIKDKISEFDVVIEQFRPDVMRRLGLDYATLAEINPRLIY
HHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHCCCCEEEE
CSITGYGQTGSYKDRAGHDINYLALAGIAGYSGRQDSGPPPLGIQVADIAGGSLHAVIAI
EEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHH
LAAVVERSRSGIGQYIDISMTDCVASLNSMAASATLAAQVEQAPEQGMLNGGIFYDYYMT
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEE
QDGRYLSIGSLEPQFMAGLSAALDLPVLLQKGASLDEQDRQEVKQAIQEKIKAKTFKEWH
CCCCEEEECCCCHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EIFANLDVCVEPVLSLSEALNSPLAQQRGWIVNVPLQNNTPDTEPQIACPIKFSRSQMRY
HHHHCHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCCCCCCCCCEEECEEECHHHHHH
SFVGQKLGEGQW
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]