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The map label for this gene is mdcF [H]

Identifier: 213157843

GI number: 213157843

Start: 3432652

End: 3433578

Strand: Reverse

Name: mdcF [H]

Synonym: AB57_3327

Alternate gene names: 213157843

Gene position: 3433578-3432652 (Counterclockwise)

Preceding gene: 213157844

Following gene: 213157839

Centisome position: 84.77

GC content: 37.0

Gene sequence:

>927_bases
GTGGTTTTTCAGGTAATTTTACCAATTTTGATTTTATTATTGATGGGGTACTGTAGTGTCCTCATTAAACTGGTAACACC
TGAACAAATTAAGGCTTTGAGTGCATTTGTTATTAAAATTTCTTTACCTGCTTTTTTAATTTACCAATCTTTAGCCAATA
AAAACTTACAAGATATTTGGCACCCTGCTTATTTTATTGCTTATGGTGGCGGTTCTTTAATCTTGTTTTTTGGGGCTTTT
ATCCTTTACCGCAAGTATTTTAAAAATAGCCTAACACATAGTGCAGTCATATCGATGGGCGCTTCTATGTCAAATACAGG
TTTTATGGGTACAGCGATTCTAACCATGCTAATGGGGAGTCATGCTGCAATCTATATATCTTTAACCTTAATTATCGAAA
ATTTATTAATAGTTGCTTTAATGCTCATTTTGGCAGAAGCGGGTTTGCATCAACAGCAACGGCTTTTGCCTTTACTGAAA
AAAACATTCATTAATTTACTTAAAAATCCTGTAATTATTGCAATTTTAGTTGGGATGAGCTGCATTTTGCTAGATATTCA
TCTGCCTTCAAAACTTGGTCAAGCCTTAGAACTTTTAGGAAGAACAGCTTCGCCTCTAGCATTATTTGCTATTGGTGGCA
GCTTGGTTGGTATTGGTATTACCGCCGTGAATTTCCAAAGTATATTGTTGGCTGGATTTAATGTCATCCTTATGCCTGTT
GTGATTTTTGGGCTGTTCCTTTTACTGCCAAACGTGAGCCAAGAGATGTTATATGCTGGCACTTTACTTGCTGCGCTGCC
AATGCCGATCGCTTTTGGTATTTTTGGGCAAGCCTACGGTTTAAATGAAAGAGCATTAACCCCCTTAATGATTAGTACCA
TTATTGGCTTTATGGGGGTGAGTGGGCTTATTGCTTTGTGGTGGTAA

Upstream 100 bases:

>100_bases
CACATGGCTTAAAACAGCTTTTTGATTCTTTTTAGTTTTTAATATTCGGGCAAATTAAGATTTGCCCGTTTTTCTTTTGA
AATGAGTGAGGAAGTAGTCT

Downstream 100 bases:

>100_bases
AAGAAAAGCCCCATGTGGGGCTATTGTCTCTTTACTATTTTTTAGGAGCTGGCTGCGTAGGAGCGGCGGCAGCTTGTTTA
TTCTTCTCAGCAATAATTTT

Product: auxin efflux Carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MVFQVILPILILLLMGYCSVLIKLVTPEQIKALSAFVIKISLPAFLIYQSLANKNLQDIWHPAYFIAYGGGSLILFFGAF
ILYRKYFKNSLTHSAVISMGASMSNTGFMGTAILTMLMGSHAAIYISLTLIIENLLIVALMLILAEAGLHQQQRLLPLLK
KTFINLLKNPVIIAILVGMSCILLDIHLPSKLGQALELLGRTASPLALFAIGGSLVGIGITAVNFQSILLAGFNVILMPV
VIFGLFLLLPNVSQEMLYAGTLLAALPMPIAFGIFGQAYGLNERALTPLMISTIIGFMGVSGLIALWW

Sequences:

>Translated_308_residues
MVFQVILPILILLLMGYCSVLIKLVTPEQIKALSAFVIKISLPAFLIYQSLANKNLQDIWHPAYFIAYGGGSLILFFGAF
ILYRKYFKNSLTHSAVISMGASMSNTGFMGTAILTMLMGSHAAIYISLTLIIENLLIVALMLILAEAGLHQQQRLLPLLK
KTFINLLKNPVIIAILVGMSCILLDIHLPSKLGQALELLGRTASPLALFAIGGSLVGIGITAVNFQSILLAGFNVILMPV
VIFGLFLLLPNVSQEMLYAGTLLAALPMPIAFGIFGQAYGLNERALTPLMISTIIGFMGVSGLIALWW
>Mature_308_residues
MVFQVILPILILLLMGYCSVLIKLVTPEQIKALSAFVIKISLPAFLIYQSLANKNLQDIWHPAYFIAYGGGSLILFFGAF
ILYRKYFKNSLTHSAVISMGASMSNTGFMGTAILTMLMGSHAAIYISLTLIIENLLIVALMLILAEAGLHQQQRLLPLLK
KTFINLLKNPVIIAILVGMSCILLDIHLPSKLGQALELLGRTASPLALFAIGGSLVGIGITAVNFQSILLAGFNVILMPV
VIFGLFLLLPNVSQEMLYAGTLLAALPMPIAFGIFGQAYGLNERALTPLMISTIIGFMGVSGLIALWW

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33324; Mature: 33324

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFQVILPILILLLMGYCSVLIKLVTPEQIKALSAFVIKISLPAFLIYQSLANKNLQDIW
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
HPAYFIAYGGGSLILFFGAFILYRKYFKNSLTHSAVISMGASMSNTGFMGTAILTMLMGS
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
HAAIYISLTLIIENLLIVALMLILAEAGLHQQQRLLPLLKKTFINLLKNPVIIAILVGMS
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
CILLDIHLPSKLGQALELLGRTASPLALFAIGGSLVGIGITAVNFQSILLAGFNVILMPV
HHHHEECCCHHHHHHHHHHCCCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIFGLFLLLPNVSQEMLYAGTLLAALPMPIAFGIFGQAYGLNERALTPLMISTIIGFMGV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
SGLIALWW
HHHHHHCC
>Mature Secondary Structure
MVFQVILPILILLLMGYCSVLIKLVTPEQIKALSAFVIKISLPAFLIYQSLANKNLQDIW
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
HPAYFIAYGGGSLILFFGAFILYRKYFKNSLTHSAVISMGASMSNTGFMGTAILTMLMGS
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
HAAIYISLTLIIENLLIVALMLILAEAGLHQQQRLLPLLKKTFINLLKNPVIIAILVGMS
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
CILLDIHLPSKLGQALELLGRTASPLALFAIGGSLVGIGITAVNFQSILLAGFNVILMPV
HHHHEECCCHHHHHHHHHHCCCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIFGLFLLLPNVSQEMLYAGTLLAALPMPIAFGIFGQAYGLNERALTPLMISTIIGFMGV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
SGLIALWW
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]