| Definition | Acinetobacter baumannii AB0057, complete genome. |
|---|---|
| Accession | NC_011586 |
| Length | 4,050,513 |
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The map label for this gene is rng [H]
Identifier: 213157796
GI number: 213157796
Start: 3378408
End: 3379817
Strand: Reverse
Name: rng [H]
Synonym: AB57_3279
Alternate gene names: 213157796
Gene position: 3379817-3378408 (Counterclockwise)
Preceding gene: 213157797
Following gene: 213157795
Centisome position: 83.44
GC content: 42.2
Gene sequence:
>1410_bases GTGGCATTAATCGAAAATGGAACTGTTAATGAGCTGTATGTTGAACGTACAGTTAAACGTGGACTTGTCGGCAATATCTA CAAAGGTAAAGTTGTACGTGTGCTTCCGGGTATGCAAGCAGCCTTTGTTGATATCGGTTTATCCAGAACGGCCTTTTTGC ATATTAATGATATGGTTTGGCCACGTTCACAGCCAACTCCAAATGTGTTTGAACTACTTCATCCAGGGCAGATTCTTACC GTTCAGGTGATGAAGGATATGCTCGGTACTAAAGGCGCTCGCCTGAGCACAGATCTTTCAATTCCTTCTCGCTATTTAGT TCTTATGCCGTATGGTAACCATATTGGTGTTTCTCAGCGCATTGAGTCTGAAGAAGAGCGTGATCGGCTACGTAATATTA TTGAGAGCATTCAGGCGGAGCATAATTTACCCGGTAGCGTAATTGTTCGTACTGCTGCTGAAGGGGTAGATGAAGCCGAA ATTGCACAAGATATGTGCTACCTCAGTAAGTTATGGGAATATATTCAGCGTAAGCAAGTTGATGTGGCAGTACCTTCCTT AATTTTTGAGGAACTACCGCTACCGCAACGAATTATCCGTGATCTGGCAAGTGAAGAAACCGCAAAGATTTATGTCGATT CGAGAGAGATTCACGGCAAACTGCGTGAGTTTGTAGATGAGTTTGTTCCGAATATGCAAAGTCGCCTGATTCATTACCCG GGTGAGCGTCCATTATTTGATCTTTACAACGTTGAAGAAGATATCCAAAAAGCACTGCAAACACGCGTTGCTTTAAAGTC TGGTGGTTATTTAATGATTGACCAGACTGAGGCGATGACCACAATAGATGTCAATACAGGCTCTTATGTTGGTGGCCGTA GCCTTGAAGACACTGTCTTTAAGACCAACATGGAAGCGACTCAGGTGATTGCGCGTCAGCTTAGACTACGAAATCTAGGC GGCATTATCATTATTGATTTTATTGACATGCAAGAAGCGATTCATCGTGAAGAAGTGATGCGTCAATTTGAAAAAATGCT TGAACGTGATCATGCCAAGACCAAAATCACACAGGTTTCTGAACTTGGTCTGGTAGAAATGACACGTAAACGTACACGTG AATCATTAGAACACTTGTTATGTGAATCGTGTCCAACGTGTCAGGGACGTGGTTTTGTCAAAACTGCAGAGACAGTGTGT TACGAAATATTTCGAGAGATATTACGCTACACCCGTGCATTTGAGTCTACGAGTGGCTTTACTGTCGTTGCTCATCCATC CGTGATTGACCGATTATTAACAGCAGAAGCACCTGCAGTGGCGGATTTAGAGCATTTTATCAACAGAGTTATTAAATTTC AGGTCGAAAATTTATATACGCAAGAGCAATACGATATCATTTTAAGTTAA
Upstream 100 bases:
>100_bases ATTAACAGTCCCTCTGACTCTTTAATAAAAATTTTATAATGCTTTGAGTTTATGTATGTCAGAAGAACTACTTATTAATG TCACACCTATGGAGTGTCGG
Downstream 100 bases:
>100_bases AGTTGTAACAAGATATCGCTTAATCCTTGTTACAACTGAAATTTTACTTTCATTCATGAATTTTAAATACTACTTACATA CAGTAGCCCTAGACGTTCTC
Product: ribonuclease G
Products: NA
Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDMVWPRSQPTPNVFELLHPGQILT VQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHIGVSQRIESEEERDRLRNIIESIQAEHNLPGSVIVRTAAEGVDEAE IAQDMCYLSKLWEYIQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQSRLIHYP GERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRSLEDTVFKTNMEATQVIARQLRLRNLG GIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKTKITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVC YEIFREILRYTRAFESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDIILS
Sequences:
>Translated_469_residues MALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDMVWPRSQPTPNVFELLHPGQILT VQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHIGVSQRIESEEERDRLRNIIESIQAEHNLPGSVIVRTAAEGVDEAE IAQDMCYLSKLWEYIQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQSRLIHYP GERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRSLEDTVFKTNMEATQVIARQLRLRNLG GIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKTKITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVC YEIFREILRYTRAFESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDIILS >Mature_468_residues ALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDMVWPRSQPTPNVFELLHPGQILTV QVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHIGVSQRIESEEERDRLRNIIESIQAEHNLPGSVIVRTAAEGVDEAEI AQDMCYLSKLWEYIQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQSRLIHYPG ERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRSLEDTVFKTNMEATQVIARQLRLRNLGG IIIIDFIDMQEAIHREEVMRQFEKMLERDHAKTKITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCY EIFREILRYTRAFESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDIILS
Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm, cytoskeleton [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=478, Percent_Identity=53.5564853556485, Blast_Score=496, Evalue=1e-141, Organism=Escherichia coli, GI1787325, Length=413, Percent_Identity=35.8353510895884, Blast_Score=253, Evalue=2e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: 3.1.4.- [C]
Molecular weight: Translated: 53549; Mature: 53418
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDMVW CCEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHCCCCCEEEEEEECCCC PRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHIGVSQR CCCCCCCHHHHHCCCCCEEHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCCHHHH IESEEERDRLRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEYIQRKQV HCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHCH DVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQSRLIHYP HHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHEECC GERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRSLEDTVF CCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHHH KTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKTKITQVS HCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAFESTSGF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE TVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDIILS EEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCEECC >Mature Secondary Structure ALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDMVW CEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHCCCCCEEEEEEECCCC PRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHIGVSQR CCCCCCCHHHHHCCCCCEEHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCCHHHH IESEEERDRLRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEYIQRKQV HCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHCH DVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQSRLIHYP HHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHEECC GERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRSLEDTVF CCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHHH KTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKTKITQVS HCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAFESTSGF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE TVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDIILS EEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]