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The map label for this gene is yabF [C]

Identifier: 213157790

GI number: 213157790

Start: 3372178

End: 3372876

Strand: Direct

Name: yabF [C]

Synonym: AB57_3273

Alternate gene names: 213157790

Gene position: 3372178-3372876 (Clockwise)

Preceding gene: 213157789

Following gene: 213157791

Centisome position: 83.25

GC content: 37.48

Gene sequence:

>699_bases
ATGAATATCCTGATTGTTCATGCTCATCCAGAACCTCTGTCTTTTACAACTTCCCTAAAAACGACAGCACAGCAAACCTT
TAAAAAATTGGGCCATCAAGTAGAAATTTCCGATTTATATGCAATGCAGTTTAATCCTGTTGCCTCTAAGGAAGATTTTT
TAGAACTCAATCAACCTGATTATTTTAACTATGCATTAGAACAGCGAAATGCCACAAAACAACAACTTTTGGCTACTGAT
ATTCAAGCAGAAATTGACAAAGTAAAACGCGCAGATCTAATTATCTTGAACTTTCCACTTTATTGGACTTCTGTTCCAGC
AATTTTAAAAGGCTGGATTGATCGTGTATTTGTCTCTGGACTTTTTTATGGGGGTAAGCGGTTTTACAACCATGGTGGCA
TGGCAGGTAAAAAAGCAATGCTCTGTTTAACACTCGGTGGTAGAACACATATGTTTGGGGAAAATTCTATTCACGGACCA
ATTGAACATTATCTATCACCGATTCAACGCGGTACTTTGGCTTATACTGGCTTTGAAGTTCTTCCCCCATTCATTGCCTA
CCATGTACCTTACATTAGCCAAGAAGCACGTGAAACTATTCTTGAGGACTATGTCACTTATCTCACTCACCTTGACCAAC
TTGAACCATTAAAATTTCCTAAACTTGAAGAATTTGATGAAAAGTTATATCCCCTCTAA

Upstream 100 bases:

>100_bases
TGCCATGCTTTTAAATTCAGGCATAGTCACTTAAGACAAACTGACTTAACTCTCCGACATTCCACTAAAAACTAATCTTA
TCTTTAAGAGTAAAGACACT

Downstream 100 bases:

>100_bases
TGCTATATTTTAAATCTAAAAGGCGCGATAACCGATTTCTTTTCTATTTCGGTTATCCCTTAAATAAAGCAAGCTTAAAT
CCAGCAATTAATTCCTCAAA

Product: NAD(P)H dehydrogenase, quinone family

Products: NAD+; NADP+; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MNILIVHAHPEPLSFTTSLKTTAQQTFKKLGHQVEISDLYAMQFNPVASKEDFLELNQPDYFNYALEQRNATKQQLLATD
IQAEIDKVKRADLIILNFPLYWTSVPAILKGWIDRVFVSGLFYGGKRFYNHGGMAGKKAMLCLTLGGRTHMFGENSIHGP
IEHYLSPIQRGTLAYTGFEVLPPFIAYHVPYISQEARETILEDYVTYLTHLDQLEPLKFPKLEEFDEKLYPL

Sequences:

>Translated_232_residues
MNILIVHAHPEPLSFTTSLKTTAQQTFKKLGHQVEISDLYAMQFNPVASKEDFLELNQPDYFNYALEQRNATKQQLLATD
IQAEIDKVKRADLIILNFPLYWTSVPAILKGWIDRVFVSGLFYGGKRFYNHGGMAGKKAMLCLTLGGRTHMFGENSIHGP
IEHYLSPIQRGTLAYTGFEVLPPFIAYHVPYISQEARETILEDYVTYLTHLDQLEPLKFPKLEEFDEKLYPL
>Mature_232_residues
MNILIVHAHPEPLSFTTSLKTTAQQTFKKLGHQVEISDLYAMQFNPVASKEDFLELNQPDYFNYALEQRNATKQQLLATD
IQAEIDKVKRADLIILNFPLYWTSVPAILKGWIDRVFVSGLFYGGKRFYNHGGMAGKKAMLCLTLGGRTHMFGENSIHGP
IEHYLSPIQRGTLAYTGFEVLPPFIAYHVPYISQEARETILEDYVTYLTHLDQLEPLKFPKLEEFDEKLYPL

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Homo sapiens, GI156564357, Length=217, Percent_Identity=42.3963133640553, Blast_Score=180, Evalue=1e-45,
Organism=Homo sapiens, GI4505415, Length=224, Percent_Identity=41.9642857142857, Blast_Score=152, Evalue=2e-37,
Organism=Homo sapiens, GI70995396, Length=224, Percent_Identity=35.7142857142857, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI70995422, Length=224, Percent_Identity=33.9285714285714, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1786231, Length=195, Percent_Identity=33.8461538461538, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787129, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.2

Molecular weight: Translated: 26616; Mature: 26616

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIVHAHPEPLSFTTSLKTTAQQTFKKLGHQVEISDLYAMQFNPVASKEDFLELNQPD
CEEEEEECCCCCCEEHHHHHHHHHHHHHHHCCEEEEHHEEEEECCCCCCCHHHHCCCCCC
YFNYALEQRNATKQQLLATDIQAEIDKVKRADLIILNFPLYWTSVPAILKGWIDRVFVSG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
LFYGGKRFYNHGGMAGKKAMLCLTLGGRTHMFGENSIHGPIEHYLSPIQRGTLAYTGFEV
HHHCCHHHHCCCCCCCCCEEEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCEEECCHHH
LPPFIAYHVPYISQEARETILEDYVTYLTHLDQLEPLKFPKLEEFDEKLYPL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MNILIVHAHPEPLSFTTSLKTTAQQTFKKLGHQVEISDLYAMQFNPVASKEDFLELNQPD
CEEEEEECCCCCCEEHHHHHHHHHHHHHHHCCEEEEHHEEEEECCCCCCCHHHHCCCCCC
YFNYALEQRNATKQQLLATDIQAEIDKVKRADLIILNFPLYWTSVPAILKGWIDRVFVSG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
LFYGGKRFYNHGGMAGKKAMLCLTLGGRTHMFGENSIHGPIEHYLSPIQRGTLAYTGFEV
HHHCCHHHHCCCCCCCCCEEEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCEEECCHHH
LPPFIAYHVPYISQEARETILEDYVTYLTHLDQLEPLKFPKLEEFDEKLYPL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; NADPH; H+; acceptor

Specific reaction: NAD(P)H + H+ + acceptor = NAD(P)+ + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]