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The map label for this gene is ypfJ [H]

Identifier: 213157639

GI number: 213157639

Start: 3239032

End: 3239931

Strand: Reverse

Name: ypfJ [H]

Synonym: AB57_3116

Alternate gene names: 213157639

Gene position: 3239931-3239032 (Counterclockwise)

Preceding gene: 213157640

Following gene: 213157638

Centisome position: 79.99

GC content: 43.11

Gene sequence:

>900_bases
ATGCGTTGGAGAGATCGTCGAGTCAGTACCAATGTTGAAGACCGTCGAGGCGGAGGCGGTGTTAGGGCAGGTGGTATTAG
TATTATTGGTTTGGTTGTGGCATTTGTTGCATGGAAATTTTTTGGCGTTGACCCCCAACAAGCATATCAGGCAACGCAGC
AGGTTACTGCTTCGCAACAATCAAATGCAACTGCACCCGAAAGTTTAACAGCCGAGCAAAAGGAAGCTTCTGATTTTGTT
GGAACAGTATTAGCCGATACAGAGGATACGTGGACACCTATTTTTAAACAGTTAGGTAAAACTTATACGCCACCAACATT
AGTATTATTTAGTGGAATAGCTCAATCAGGATGTGGCACAGCTCAATCTGCTATGGGACCATTTTATTGTCCTGCAGACC
AAAAGGTTTATATTGATACAGAATTCTTCAAAGATATGCGTGAGCAGATGGGAATATCTGGCGAACAAAATCAGACAGAA
TTATCGAGACAAGATCAGGCAGGGGACTTTGCCCAAGCTTATGTAGTTGCCCATGAAGTAGGACATCATGTTCAAACTTT
GCTTGGTATCTCATCTCAAGTACAACAGGCTCGTGCGCAAGTCAGTCAAAGAGAAGGTAATCAGTTATCTGTACGTCAAG
AATTACAAGCTGACTGTTTAGCGGGTATCTGGGCCAATCATAATCAACAGCGTACTCAGTTTTTAGAGCAGGGGGACGTC
GAGGAGGCAATGGATGCCGCGCAAAAAATTGGAGATGACTACTTACAAAAACGAGCAACAGGACAAGTCGTTCCGGATAG
CTTTACTCATGGTAGTAGTGAACAGCGAATGCACTGGTTCCAAGTCGGTTTAAAAACCGGTGATATTAACCAATGCGATA
CTTTTAATAATTCTATCTAA

Upstream 100 bases:

>100_bases
TTGTTGCTGGTGCAATAGTATTGCTTGTTGTTAGCTTGATACAAAAAATGTGGCCAAAAGCTTCTAGTTAATCAGGCCAT
CTACAAAGAAGAGGGAAATT

Downstream 100 bases:

>100_bases
ATTTATAAATAAGATGAGTTTACAAGGTGTTTAAGTAGGCTCATCTTTTTAATCATCCCTTCCACATAATTAATGTTAAG
AAATTTAACTAATTGATAGA

Product: metallopeptidase, zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRWRDRRVSTNVEDRRGGGGVRAGGISIIGLVVAFVAWKFFGVDPQQAYQATQQVTASQQSNATAPESLTAEQKEASDFV
GTVLADTEDTWTPIFKQLGKTYTPPTLVLFSGIAQSGCGTAQSAMGPFYCPADQKVYIDTEFFKDMREQMGISGEQNQTE
LSRQDQAGDFAQAYVVAHEVGHHVQTLLGISSQVQQARAQVSQREGNQLSVRQELQADCLAGIWANHNQQRTQFLEQGDV
EEAMDAAQKIGDDYLQKRATGQVVPDSFTHGSSEQRMHWFQVGLKTGDINQCDTFNNSI

Sequences:

>Translated_299_residues
MRWRDRRVSTNVEDRRGGGGVRAGGISIIGLVVAFVAWKFFGVDPQQAYQATQQVTASQQSNATAPESLTAEQKEASDFV
GTVLADTEDTWTPIFKQLGKTYTPPTLVLFSGIAQSGCGTAQSAMGPFYCPADQKVYIDTEFFKDMREQMGISGEQNQTE
LSRQDQAGDFAQAYVVAHEVGHHVQTLLGISSQVQQARAQVSQREGNQLSVRQELQADCLAGIWANHNQQRTQFLEQGDV
EEAMDAAQKIGDDYLQKRATGQVVPDSFTHGSSEQRMHWFQVGLKTGDINQCDTFNNSI
>Mature_299_residues
MRWRDRRVSTNVEDRRGGGGVRAGGISIIGLVVAFVAWKFFGVDPQQAYQATQQVTASQQSNATAPESLTAEQKEASDFV
GTVLADTEDTWTPIFKQLGKTYTPPTLVLFSGIAQSGCGTAQSAMGPFYCPADQKVYIDTEFFKDMREQMGISGEQNQTE
LSRQDQAGDFAQAYVVAHEVGHHVQTLLGISSQVQQARAQVSQREGNQLSVRQELQADCLAGIWANHNQQRTQFLEQGDV
EEAMDAAQKIGDDYLQKRATGQVVPDSFTHGSSEQRMHWFQVGLKTGDINQCDTFNNSI

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=309, Percent_Identity=47.5728155339806, Blast_Score=280, Evalue=1e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 32949; Mature: 32949

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWRDRRVSTNVEDRRGGGGVRAGGISIIGLVVAFVAWKFFGVDPQQAYQATQQVTASQQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SNATAPESLTAEQKEASDFVGTVLADTEDTWTPIFKQLGKTYTPPTLVLFSGIAQSGCGT
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
AQSAMGPFYCPADQKVYIDTEFFKDMREQMGISGEQNQTELSRQDQAGDFAQAYVVAHEV
HHHCCCCEECCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
GHHVQTLLGISSQVQQARAQVSQREGNQLSVRQELQADCLAGIWANHNQQRTQFLEQGDV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
EEAMDAAQKIGDDYLQKRATGQVVPDSFTHGSSEQRMHWFQVGLKTGDINQCDTFNNSI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRWRDRRVSTNVEDRRGGGGVRAGGISIIGLVVAFVAWKFFGVDPQQAYQATQQVTASQQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SNATAPESLTAEQKEASDFVGTVLADTEDTWTPIFKQLGKTYTPPTLVLFSGIAQSGCGT
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
AQSAMGPFYCPADQKVYIDTEFFKDMREQMGISGEQNQTELSRQDQAGDFAQAYVVAHEV
HHHCCCCEECCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
GHHVQTLLGISSQVQQARAQVSQREGNQLSVRQELQADCLAGIWANHNQQRTQFLEQGDV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
EEAMDAAQKIGDDYLQKRATGQVVPDSFTHGSSEQRMHWFQVGLKTGDINQCDTFNNSI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]