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The map label for this gene is oprD [H]

Identifier: 213157514

GI number: 213157514

Start: 2287843

End: 2289099

Strand: Direct

Name: oprD [H]

Synonym: AB57_2203

Alternate gene names: 213157514

Gene position: 2287843-2289099 (Clockwise)

Preceding gene: 213157513

Following gene: 213157519

Centisome position: 56.48

GC content: 37.31

Gene sequence:

>1257_bases
ATGGAATTATTACACCGTTTTAAACCACACACTTTAGCTGTTGCCACTTTATTTATTATGTGCAGCAGTTCTTGGGCTGC
AAATCCAAATCAGCAAACTGAAGATGAGTGGAAATTCACTTTAAAAAATGCCTATATCAATCGTGATTTTGATAATGACG
CCCTTAAAGATACCGGTAGTTGGTCTCAGGCAGCATCTTTATTTTATAAATCGAAAATGCATGACACTCCACTAGTCATA
GCAGATAAACCTATTACGATTGGAGCTGATGCTTCCGTTCAATACGCCGTACGTTTGAGTTCAGACAAACATGTCGCAGA
TACAGTTTTGCCTTTTAATAAAGAAACGCAATCTCAAGCATCTGATTATCTAAAATACGGCGCGACTTTAAAACTAGGTT
ATGACAAAACTCTTTTAAGTGTCGGTGAACTCTGGCTAGATTTACCTGTAACGGCTGTTGATGCTAGTCGTCAGTTACTC
ACTTCGTATTGGGGAACCAATCTTAAGTCACAACTTTCAGATCAACTTTATGCCGAAATTGGCCGAGTGGAAAAAGTCTC
GCCACGAAATGAAGAAGATTTTAAAAAGTTTTCGTTCACAGCAAATGGAATTACCAAAGAATCTGATGGCTTAAATTATA
TTGACCTGCGCTATCAATTTACGCCGTCTTTGAAGGGCGAATATTATTTTGGTAATTTAGAAGATCTGTATAACAAGCAT
TATGTTGGGCTTGAGCATACGTGGAAACAACCAACTTTTGCCCTGACCTCCAAATTTAAATATTTTAATGCGAAAGATGA
CGGCAATACCTTTGATATTGATGCAGAGAACATTGGTTTACTTGAAACCGTCAAAGTAAAAAACCATACCTTTGGTTTGG
GTTACCAACAAATTATTGGAGAGTCGGCTTACCCATTACCAGATGGCTTCTTACCAGAAACTTATTTCATTAACTGGAAT
GCCACAGGCTTTTTCAAAGAAGATGAAAAGTCTTACCATGTCATGTATGGCTATGACTTTAAAGATTACATTCCCGGCTT
AAACGCAATGGTGAAATATGTTTACGGTCATGACTTTAAAGCAGCTAATGGTGAGAAAAACCACGAAACTGAGTCCAATG
TCATTCTGAACTATGCCTTTCAACAGCCACTCTTAAAAGGCTTTGCCCTGCAATATATTCGAATTGATTACAACGTAAAA
CATGGTAATGACTTTGGTGAAGACCGTTTATTTGTTAATTACACCAAAAAATTCTAA

Upstream 100 bases:

>100_bases
TTATAAAAACAGGAGTTCCCTTTAAACAATTTAGGGAACACCACACCAATATTTCACAATACGTAATGCCGAGGACTGGC
ATATATCTTGGAAATGGATT

Downstream 100 bases:

>100_bases
ATAAAAATTACCCCCTAAAATTTAGGGGGTAATTTTTTATCCTAATTTATTAACCAATCTCAAAGGTAAAACCTTCATGG
CAATACTCATTGGTAACCAT

Product: benzoate transport porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MELLHRFKPHTLAVATLFIMCSSSWAANPNQQTEDEWKFTLKNAYINRDFDNDALKDTGSWSQAASLFYKSKMHDTPLVI
ADKPITIGADASVQYAVRLSSDKHVADTVLPFNKETQSQASDYLKYGATLKLGYDKTLLSVGELWLDLPVTAVDASRQLL
TSYWGTNLKSQLSDQLYAEIGRVEKVSPRNEEDFKKFSFTANGITKESDGLNYIDLRYQFTPSLKGEYYFGNLEDLYNKH
YVGLEHTWKQPTFALTSKFKYFNAKDDGNTFDIDAENIGLLETVKVKNHTFGLGYQQIIGESAYPLPDGFLPETYFINWN
ATGFFKEDEKSYHVMYGYDFKDYIPGLNAMVKYVYGHDFKAANGEKNHETESNVILNYAFQQPLLKGFALQYIRIDYNVK
HGNDFGEDRLFVNYTKKF

Sequences:

>Translated_418_residues
MELLHRFKPHTLAVATLFIMCSSSWAANPNQQTEDEWKFTLKNAYINRDFDNDALKDTGSWSQAASLFYKSKMHDTPLVI
ADKPITIGADASVQYAVRLSSDKHVADTVLPFNKETQSQASDYLKYGATLKLGYDKTLLSVGELWLDLPVTAVDASRQLL
TSYWGTNLKSQLSDQLYAEIGRVEKVSPRNEEDFKKFSFTANGITKESDGLNYIDLRYQFTPSLKGEYYFGNLEDLYNKH
YVGLEHTWKQPTFALTSKFKYFNAKDDGNTFDIDAENIGLLETVKVKNHTFGLGYQQIIGESAYPLPDGFLPETYFINWN
ATGFFKEDEKSYHVMYGYDFKDYIPGLNAMVKYVYGHDFKAANGEKNHETESNVILNYAFQQPLLKGFALQYIRIDYNVK
HGNDFGEDRLFVNYTKKF
>Mature_418_residues
MELLHRFKPHTLAVATLFIMCSSSWAANPNQQTEDEWKFTLKNAYINRDFDNDALKDTGSWSQAASLFYKSKMHDTPLVI
ADKPITIGADASVQYAVRLSSDKHVADTVLPFNKETQSQASDYLKYGATLKLGYDKTLLSVGELWLDLPVTAVDASRQLL
TSYWGTNLKSQLSDQLYAEIGRVEKVSPRNEEDFKKFSFTANGITKESDGLNYIDLRYQFTPSLKGEYYFGNLEDLYNKH
YVGLEHTWKQPTFALTSKFKYFNAKDDGNTFDIDAENIGLLETVKVKNHTFGLGYQQIIGESAYPLPDGFLPETYFINWN
ATGFFKEDEKSYHVMYGYDFKDYIPGLNAMVKYVYGHDFKAANGEKNHETESNVILNYAFQQPLLKGFALQYIRIDYNVK
HGNDFGEDRLFVNYTKKF

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 47935; Mature: 47935

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLHRFKPHTLAVATLFIMCSSSWAANPNQQTEDEWKFTLKNAYINRDFDNDALKDTGS
CCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCCHHCCCCC
WSQAASLFYKSKMHDTPLVIADKPITIGADASVQYAVRLSSDKHVADTVLPFNKETQSQA
HHHHHHHHHHHHCCCCCEEEECCCEEECCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHH
SDYLKYGATLKLGYDKTLLSVGELWLDLPVTAVDASRQLLTSYWGTNLKSQLSDQLYAEI
HHHHHCCCEEEECCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHH
GRVEKVSPRNEEDFKKFSFTANGITKESDGLNYIDLRYQFTPSLKGEYYFGNLEDLYNKH
CCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEEECCHHHHHCCE
YVGLEHTWKQPTFALTSKFKYFNAKDDGNTFDIDAENIGLLETVKVKNHTFGLGYQQIIG
EECCCCCCCCCCEEEEECEEEEECCCCCCEEEECCCCCCEEEEEEECCCEECCCHHHHHC
ESAYPLPDGFLPETYFINWNATGFFKEDEKSYHVMYGYDFKDYIPGLNAMVKYVYGHDFK
CCCCCCCCCCCCCEEEEEECCEEEEECCCCCEEEEEECCHHHHCCCHHHHHHHHHCCCEE
AANGEKNHETESNVILNYAFQQPLLKGFALQYIRIDYNVKHGNDFGEDRLFVNYTKKF
CCCCCCCCCCCCCEEEEEHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MELLHRFKPHTLAVATLFIMCSSSWAANPNQQTEDEWKFTLKNAYINRDFDNDALKDTGS
CCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCCHHCCCCC
WSQAASLFYKSKMHDTPLVIADKPITIGADASVQYAVRLSSDKHVADTVLPFNKETQSQA
HHHHHHHHHHHHCCCCCEEEECCCEEECCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHH
SDYLKYGATLKLGYDKTLLSVGELWLDLPVTAVDASRQLLTSYWGTNLKSQLSDQLYAEI
HHHHHCCCEEEECCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHH
GRVEKVSPRNEEDFKKFSFTANGITKESDGLNYIDLRYQFTPSLKGEYYFGNLEDLYNKH
CCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEEECCHHHHHCCE
YVGLEHTWKQPTFALTSKFKYFNAKDDGNTFDIDAENIGLLETVKVKNHTFGLGYQQIIG
EECCCCCCCCCCEEEEECEEEEECCCCCCEEEECCCCCCEEEEEEECCCEECCCHHHHHC
ESAYPLPDGFLPETYFINWNATGFFKEDEKSYHVMYGYDFKDYIPGLNAMVKYVYGHDFK
CCCCCCCCCCCCCEEEEEECCEEEEECCCCCEEEEEECCHHHHCCCHHHHHHHHHCCCEE
AANGEKNHETESNVILNYAFQQPLLKGFALQYIRIDYNVKHGNDFGEDRLFVNYTKKF
CCCCCCCCCCCCCEEEEEHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]