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The map label for this gene is xylS3 [H]

Identifier: 213157279

GI number: 213157279

Start: 2058676

End: 2059521

Strand: Direct

Name: xylS3 [H]

Synonym: AB57_1968

Alternate gene names: 213157279

Gene position: 2058676-2059521 (Clockwise)

Preceding gene: 213157278

Following gene: 213157281

Centisome position: 50.83

GC content: 35.7

Gene sequence:

>846_bases
ATGCGTTTGCCCAATAAAAAAATGGCAATCGGCACAATCAGTTATGGTGCAAACGTCGCTATCAACATCTCAAATTTAAA
AGCTTATAGCATTAGTTTACCTATACAGGGGCGACAAGCTCTTAACATTCGTGGTGCACATTATCAATCTGATGAAAACA
GAGGCCTAATTGTTTCAAATAATGATCAACAAGATCTGATTATCGATAAAGACTGTAGAAAATTTCAGGTGGTTATTCCT
GAGCGAAGTATGCAGATTGTCCTTGCAGATTTACTGAATAAACCTATAGAAACGCCTATCATTTTTAACCCTGAAATGCA
CTTAGACTCTGAGCAACTGATTGGAGCGTGGTGGAAGAATATTCAGAATTTTTTACAGCTAAAATCGCAATATAGCAATT
TTTATGGTTTACAGATGTTATCTGAAGACTATGAAAATTTTGTAATTAAAGCCTTACTATTATCTCAAGAAAACAACTAC
TCTGAAGCTTTAAAGTCACTCTCACATCAAGATGAGCCAGCTTATATTCGAAAGGTTCGTAATTTTATTATTGAACATGC
TCACGAAGAAATCTGTGCAGAAGACTTGCAGCGTTTGGCGGGGGTTTCAAAATCAAAATTGTATGATGAATTTCAACAAT
ACTACGGCACCAGCCCAATGTCGTATTTGAAAAAATATCGTCTTCAACAAATTTACAAAATCTTGAGCACTACAGGAGCA
GATAAAAAGGTTTCTATTTCAAAGCTTGCGTATGACTGGGGTTTTAACCATTTAAGCCGTTTTTCTCAAGAATATCGTGA
AGAATTTGGAGAAAACCCAAGTGAGACCAAAGGCAAAATTTTCTGA

Upstream 100 bases:

>100_bases
ACGCAAAGCTGAATTTGCGCAGAATCTGATGTCCATAATTTGTGGTGAACACCGTCTAGACACAATTTACAAAAATAATC
TCGATTTCCACTATGACGGA

Downstream 100 bases:

>100_bases
TATTTAATTTTCCAAATAAAAAAACTGATTTAGGCAACTAAATCAGTTTTTTTATTTATCGATTAATATTTATAGACTTT
CTTCGAGCTTTAACACTTGT

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRLPNKKMAIGTISYGANVAINISNLKAYSISLPIQGRQALNIRGAHYQSDENRGLIVSNNDQQDLIIDKDCRKFQVVIP
ERSMQIVLADLLNKPIETPIIFNPEMHLDSEQLIGAWWKNIQNFLQLKSQYSNFYGLQMLSEDYENFVIKALLLSQENNY
SEALKSLSHQDEPAYIRKVRNFIIEHAHEEICAEDLQRLAGVSKSKLYDEFQQYYGTSPMSYLKKYRLQQIYKILSTTGA
DKKVSISKLAYDWGFNHLSRFSQEYREEFGENPSETKGKIF

Sequences:

>Translated_281_residues
MRLPNKKMAIGTISYGANVAINISNLKAYSISLPIQGRQALNIRGAHYQSDENRGLIVSNNDQQDLIIDKDCRKFQVVIP
ERSMQIVLADLLNKPIETPIIFNPEMHLDSEQLIGAWWKNIQNFLQLKSQYSNFYGLQMLSEDYENFVIKALLLSQENNY
SEALKSLSHQDEPAYIRKVRNFIIEHAHEEICAEDLQRLAGVSKSKLYDEFQQYYGTSPMSYLKKYRLQQIYKILSTTGA
DKKVSISKLAYDWGFNHLSRFSQEYREEFGENPSETKGKIF
>Mature_281_residues
MRLPNKKMAIGTISYGANVAINISNLKAYSISLPIQGRQALNIRGAHYQSDENRGLIVSNNDQQDLIIDKDCRKFQVVIP
ERSMQIVLADLLNKPIETPIIFNPEMHLDSEQLIGAWWKNIQNFLQLKSQYSNFYGLQMLSEDYENFVIKALLLSQENNY
SEALKSLSHQDEPAYIRKVRNFIIEHAHEEICAEDLQRLAGVSKSKLYDEFQQYYGTSPMSYLKKYRLQQIYKILSTTGA
DKKVSISKLAYDWGFNHLSRFSQEYREEFGENPSETKGKIF

Specific function: Regulatory protein of the TOL plasmid xyl operons. XylS activates the xylXYZLTEGFJQKIH operon required for the degradation of toluene, m-xylene and p-xylene [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788778, Length=112, Percent_Identity=29.4642857142857, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32537; Mature: 32537

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPNKKMAIGTISYGANVAINISNLKAYSISLPIQGRQALNIRGAHYQSDENRGLIVSN
CCCCCCCEEEEEEECCCEEEEEEECCEEEEEECCCCCCCEEEECCCEECCCCCCEEEEEC
NDQQDLIIDKDCRKFQVVIPERSMQIVLADLLNKPIETPIIFNPEMHLDSEQLIGAWWKN
CCCCCEEECCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHH
IQNFLQLKSQYSNFYGLQMLSEDYENFVIKALLLSQENNYSEALKSLSHQDEPAYIRKVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHH
NFIIEHAHEEICAEDLQRLAGVSKSKLYDEFQQYYGTSPMSYLKKYRLQQIYKILSTTGA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
DKKVSISKLAYDWGFNHLSRFSQEYREEFGENPSETKGKIF
CCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRLPNKKMAIGTISYGANVAINISNLKAYSISLPIQGRQALNIRGAHYQSDENRGLIVSN
CCCCCCCEEEEEEECCCEEEEEEECCEEEEEECCCCCCCEEEECCCEECCCCCCEEEEEC
NDQQDLIIDKDCRKFQVVIPERSMQIVLADLLNKPIETPIIFNPEMHLDSEQLIGAWWKN
CCCCCEEECCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHH
IQNFLQLKSQYSNFYGLQMLSEDYENFVIKALLLSQENNYSEALKSLSHQDEPAYIRKVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHH
NFIIEHAHEEICAEDLQRLAGVSKSKLYDEFQQYYGTSPMSYLKKYRLQQIYKILSTTGA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
DKKVSISKLAYDWGFNHLSRFSQEYREEFGENPSETKGKIF
CCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473862 [H]