Click here to switch to the map view.

The map label for this gene is alkB [H]

Identifier: 213157180

GI number: 213157180

Start: 1949898

End: 1951121

Strand: Direct

Name: alkB [H]

Synonym: AB57_1863

Alternate gene names: 213157180

Gene position: 1949898-1951121 (Clockwise)

Preceding gene: 213157178

Following gene: 213157185

Centisome position: 48.14

GC content: 37.25

Gene sequence:

>1224_bases
ATGAATGCACCAGTAAATGTTCAGCAAGAACTTATGCCAGTGCCAGCGTCTATGCGTGAGATAGATCGTAAGCGTTATTT
ATGGATGATTAGTCCGGCTCTACCTGTAATTGGTTTAGGTATTTTAGCTGGATACCATTTTGGTCCACGCCCATTAAAGA
AAGTATTTGCTTTAGGTGGCCCACTTTTATTACACGTTGTGATTCCTGCAATTGATACAATTATTGGTAAAGATGCGCGT
AATCCAACCGATGAAGAAATTAAACTTCTTGAGAAAGATCCATATTATTCGCGTTTGGTAAAAAGTTTTATTCCATTGCA
GTATGCGGCAAATATTTATGCATGTTATTTAACAAGCCGTAAAGATACTTCATTTATTGACAAAATTTTGCTTGGTATTT
CGATGGGTGCCATTAATGGTATTGCAATTAATACAGCCCATGAATTAAGCCATAAACATGATCGTATAGACCATATTTTA
TCTCATCTTGCTTTAGTGCCTACAGGTTACAACCATTTCCGTATTGAGCATCCATATGGCCATCATAAGCGTGCAGCTAC
TCCTGAAGATCCGGCATCTTCACGTATGGGTGAAACATTCTATGAATTTTGGCCACGTACTGTTATCGGTTCTTTTAAAT
CAGCAATTGAAATTGAGAAAAATCGTTTAAAACGTAAAGGTAAAGAGTTTTGGTCACTCGATAATGAATTGCTGCAAGGC
TGGGGTATGAGTGCTGCTTTCCATGCTTCTATGGTAGGAATTTTTGATAAAGGTACGATTCCTTATTTAGCAACACAAGC
ATTTTACGGGATTAGTCTATTCGAAATTATTAACTATATTGAACATTATGGCTTATTGCGTCAGAAAAAAGAAAATGGTC
AATATGAACGTACAATGCCAGAGCATAGCTGGAATAATAACAATGTAGTGACCAACTTATTCTTATATCAGTTACAGCGT
CACTCAGATCATCATGCTTATCCAACTCGTCCATTCCAAGCGTTACGTCATTTTGATGAAGCACCAGAGTTGCCAAGTGG
CTATGCAAGTATGCTGCTACCAGCCATGATTCCTTCATGGTGGTTTAAAATGATGGATAAGCGTGTATTTGATCACTACA
AAGGAGATTTAAATAAAGCAAATATTTCACCAAAACGTCGTGCAAAAATCTTCAAAAAATTTGGTGTAGTCGATAAGACC
CTAGAAGCTACACAGGCTGAATAA

Upstream 100 bases:

>100_bases
AATGCCAAAGACTTTGAAATAGGTTTTTTGGACGGTTACAACTGTTAAGAAAATAGTATTTCTTTAACTATATAGATATA
TAGAAAAAGGAAATATGACT

Downstream 100 bases:

>100_bases
TTAAAAAATATATTCCTGAAATACCGAACCCTCTAATCATGTGGTTAGAGGGTTTTATTTTACCCATAAGTTATAATGCT
AAGAAGCAAGGAGGCGAAAC

Product: alkane 1-monooxygenase

Products: NA

Alternate protein names: Alkane hydroxylase; AHs; Terminal alkane hydroxylase [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MNAPVNVQQELMPVPASMREIDRKRYLWMISPALPVIGLGILAGYHFGPRPLKKVFALGGPLLLHVVIPAIDTIIGKDAR
NPTDEEIKLLEKDPYYSRLVKSFIPLQYAANIYACYLTSRKDTSFIDKILLGISMGAINGIAINTAHELSHKHDRIDHIL
SHLALVPTGYNHFRIEHPYGHHKRAATPEDPASSRMGETFYEFWPRTVIGSFKSAIEIEKNRLKRKGKEFWSLDNELLQG
WGMSAAFHASMVGIFDKGTIPYLATQAFYGISLFEIINYIEHYGLLRQKKENGQYERTMPEHSWNNNNVVTNLFLYQLQR
HSDHHAYPTRPFQALRHFDEAPELPSGYASMLLPAMIPSWWFKMMDKRVFDHYKGDLNKANISPKRRAKIFKKFGVVDKT
LEATQAE

Sequences:

>Translated_407_residues
MNAPVNVQQELMPVPASMREIDRKRYLWMISPALPVIGLGILAGYHFGPRPLKKVFALGGPLLLHVVIPAIDTIIGKDAR
NPTDEEIKLLEKDPYYSRLVKSFIPLQYAANIYACYLTSRKDTSFIDKILLGISMGAINGIAINTAHELSHKHDRIDHIL
SHLALVPTGYNHFRIEHPYGHHKRAATPEDPASSRMGETFYEFWPRTVIGSFKSAIEIEKNRLKRKGKEFWSLDNELLQG
WGMSAAFHASMVGIFDKGTIPYLATQAFYGISLFEIINYIEHYGLLRQKKENGQYERTMPEHSWNNNNVVTNLFLYQLQR
HSDHHAYPTRPFQALRHFDEAPELPSGYASMLLPAMIPSWWFKMMDKRVFDHYKGDLNKANISPKRRAKIFKKFGVVDKT
LEATQAE
>Mature_407_residues
MNAPVNVQQELMPVPASMREIDRKRYLWMISPALPVIGLGILAGYHFGPRPLKKVFALGGPLLLHVVIPAIDTIIGKDAR
NPTDEEIKLLEKDPYYSRLVKSFIPLQYAANIYACYLTSRKDTSFIDKILLGISMGAINGIAINTAHELSHKHDRIDHIL
SHLALVPTGYNHFRIEHPYGHHKRAATPEDPASSRMGETFYEFWPRTVIGSFKSAIEIEKNRLKRKGKEFWSLDNELLQG
WGMSAAFHASMVGIFDKGTIPYLATQAFYGISLFEIINYIEHYGLLRQKKENGQYERTMPEHSWNNNNVVTNLFLYQLQR
HSDHHAYPTRPFQALRHFDEAPELPSGYASMLLPAMIPSWWFKMMDKRVFDHYKGDLNKANISPKRRAKIFKKFGVVDKT
LEATQAE

Specific function: Catalyzes the hydroxylation of n-alkanes in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases long-chain-length alkanes with at least 12 carbon atoms [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family. AlkB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: =1.14.15.3 [H]

Molecular weight: Translated: 46663; Mature: 46663

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPVNVQQELMPVPASMREIDRKRYLWMISPALPVIGLGILAGYHFGPRPLKKVFALGG
CCCCCCCHHHHHCCCHHHHHHHHHHEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHCCC
PLLLHVVIPAIDTIIGKDARNPTDEEIKLLEKDPYYSRLVKSFIPLQYAANIYACYLTSR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECC
KDTSFIDKILLGISMGAINGIAINTAHELSHKHDRIDHILSHLALVPTGYNHFRIEHPYG
CCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
HHKRAATPEDPASSRMGETFYEFWPRTVIGSFKSAIEIEKNRLKRKGKEFWSLDNELLQG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGMSAAFHASMVGIFDKGTIPYLATQAFYGISLFEIINYIEHYGLLRQKKENGQYERTMP
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
EHSWNNNNVVTNLFLYQLQRHSDHHAYPTRPFQALRHFDEAPELPSGYASMLLPAMIPSW
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
WFKMMDKRVFDHYKGDLNKANISPKRRAKIFKKFGVVDKTLEATQAE
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MNAPVNVQQELMPVPASMREIDRKRYLWMISPALPVIGLGILAGYHFGPRPLKKVFALGG
CCCCCCCHHHHHCCCHHHHHHHHHHEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHCCC
PLLLHVVIPAIDTIIGKDARNPTDEEIKLLEKDPYYSRLVKSFIPLQYAANIYACYLTSR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECC
KDTSFIDKILLGISMGAINGIAINTAHELSHKHDRIDHILSHLALVPTGYNHFRIEHPYG
CCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
HHKRAATPEDPASSRMGETFYEFWPRTVIGSFKSAIEIEKNRLKRKGKEFWSLDNELLQG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGMSAAFHASMVGIFDKGTIPYLATQAFYGISLFEIINYIEHYGLLRQKKENGQYERTMP
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
EHSWNNNNVVTNLFLYQLQRHSDHHAYPTRPFQALRHFDEAPELPSGYASMLLPAMIPSW
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
WFKMMDKRVFDHYKGDLNKANISPKRRAKIFKKFGVVDKTLEATQAE
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]