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The map label for this gene is ihfB [H]

Identifier: 213157135

GI number: 213157135

Start: 1901630

End: 1901932

Strand: Direct

Name: ihfB [H]

Synonym: AB57_1818

Alternate gene names: 213157135

Gene position: 1901630-1901932 (Clockwise)

Preceding gene: 213157134

Following gene: 213157136

Centisome position: 46.95

GC content: 41.25

Gene sequence:

>303_bases
ATGACTACTGAAGCTCTTAATAAGTCTGATTTGATTGAACGCATTGCGCTAAAAAATCCACACTTGGCTGAACCATTGGT
GGAAGAAGCGGTTAAGATTATGATTGACCAAATGATCGAAGCTCTTTCGTCTGACAATCGTATTGAAATCCGTGGTTTTG
GTAGCTTTGCATTACACCACCGTGAACCTAGAGTTGGTCGTAACCCTAAAACAGGTAAGTCAGTAGATGTTGCAGCGAAG
GCTGTTCCACATTTTAAACCAGGTAAAGCACTCCGTGATGCAGTGAATGAATCTGGAAAATAA

Upstream 100 bases:

>100_bases
GTAAACGGTAGCGTAGTATTCAACATACTGCGCTACCGTTTTGTATTTAAACAGGTTATTATCAAACGACTTAGAGTAGT
AATAAATAACGAGGTCGTAG

Downstream 100 bases:

>100_bases
ATAAAACTCATAAGTGGGGTGCCTATGCGTTATATTCTAATTGCATTACTCATTATTGTATTTGGCTATTCTTTAGCACT
TGTTTTGCAGAACCCAACAG

Product: integration host factor, beta subunit

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVGRNPKTGKSVDVAAK
AVPHFKPGKALRDAVNESGK

Sequences:

>Translated_100_residues
MTTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVGRNPKTGKSVDVAAK
AVPHFKPGKALRDAVNESGK
>Mature_99_residues
TTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVGRNPKTGKSVDVAAKA
VPHFKPGKALRDAVNESGK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=94, Percent_Identity=56.3829787234042, Blast_Score=114, Evalue=1e-27,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=41.7582417582418, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=41.1111111111111, Blast_Score=75, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11009; Mature: 10878

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHH
CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCC
REPRVGRNPKTGKSVDVAAKAVPHFKPGKALRDAVNESGK
CCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHH
CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCC
REPRVGRNPKTGKSVDVAAKAVPHFKPGKALRDAVNESGK
CCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA