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The map label for this gene is ydcN [C]

Identifier: 213157074

GI number: 213157074

Start: 1843629

End: 1844222

Strand: Direct

Name: ydcN [C]

Synonym: AB57_1755

Alternate gene names: 213157074

Gene position: 1843629-1844222 (Clockwise)

Preceding gene: 213157072

Following gene: 213157075

Centisome position: 45.52

GC content: 39.9

Gene sequence:

>594_bases
ATGGATGATATCAATATAAGGATTGCACATCGAATACGAGAGCTGCGTTTAGCACGTGGATATACTTTAGATGTGTTAGC
TGCCCGTTGCCAAGTTAGCCGTTCAGCTATTTCTTTAATTGAAAGAGGAGAAACGAGTCCTACGGCAGTTGTTCTTGAAA
AACTAGCAAATGGTCTTGAAGTACCTTTAACTCAAATTTTTACGAATGAAGCAGGGAATTCATCATCTCAACCGCTTATT
CGTCGGAATGAACAAGCTGAGTGGCGAGATCCGGAAACTGGCTATATACGCCGTACAGTTTCACCTCCGAACTTAAAATT
ACCCTTTCAGATGGTTGAAATTGAATTTCCGCCTCATTCTCGAATTACTTATGAAACTAATGAAAGCTCTAGAGTGGTAC
AGCAGCAGCTTTGGGTCGTTGAAGGGAAAATTGAAATTCAATTAGGTGAAACTTCTTATGCATTAGGTCAAGGGGATTGC
TTGGCAATGCAATTAGATCAACCTGTCATATACAGTAATCATTCAGCTCAAGTTGCTCGTTATATTTTAGTCGTTTCTAA
TCAACTGGTGCCCGCTCTTAAGGAATCTTTATGA

Upstream 100 bases:

>100_bases
CCCAATTTTCCATATATTCATAATGAAGAGTTTGAAATCATTTGATGTAATTCTATTTTAATGGAATACTTATCTATAAT
GATGGAATTGAGCTTCTTTA

Downstream 100 bases:

>100_bases
ACTATTCCCTCGATTCTAATTTCCGTTTAATTGATTGTAATGAAGCAGAGCATGCGGCAGCGATATTAGAAATTCTAAAT
GATGCGATTGTTAACTCTAC

Product: transcriptional regulator, XRE family

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Helix-Turn-Helix Domain-Containing Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; HTH-Type Transcriptional Regulator; Cupin Domain Protein; Transcriptional Regulatory Protein; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator Protein LacI Family; Transcriptional Regulator Xre Family; Transcriptional Regulator XRE; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulatory Protein With Hth Domain

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFTNEAGNSSSQPLI
RRNEQAEWRDPETGYIRRTVSPPNLKLPFQMVEIEFPPHSRITYETNESSRVVQQQLWVVEGKIEIQLGETSYALGQGDC
LAMQLDQPVIYSNHSAQVARYILVVSNQLVPALKESL

Sequences:

>Translated_197_residues
MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFTNEAGNSSSQPLI
RRNEQAEWRDPETGYIRRTVSPPNLKLPFQMVEIEFPPHSRITYETNESSRVVQQQLWVVEGKIEIQLGETSYALGQGDC
LAMQLDQPVIYSNHSAQVARYILVVSNQLVPALKESL
>Mature_197_residues
MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFTNEAGNSSSQPLI
RRNEQAEWRDPETGYIRRTVSPPNLKLPFQMVEIEFPPHSRITYETNESSRVVQQQLWVVEGKIEIQLGETSYALGQGDC
LAMQLDQPVIYSNHSAQVARYILVVSNQLVPALKESL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22182; Mature: 22182

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLE
CCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
VPLTQIFTNEAGNSSSQPLIRRNEQAEWRDPETGYIRRTVSPPNLKLPFQMVEIEFPPHS
CCHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCC
RITYETNESSRVVQQQLWVVEGKIEIQLGETSYALGQGDCLAMQLDQPVIYSNHSAQVAR
CEEEECCCHHHHHHHHHEEEECEEEEEECCCEEECCCCCEEEEEECCCEEECCCHHHHHH
YILVVSNQLVPALKESL
HHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLE
CCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
VPLTQIFTNEAGNSSSQPLIRRNEQAEWRDPETGYIRRTVSPPNLKLPFQMVEIEFPPHS
CCHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCC
RITYETNESSRVVQQQLWVVEGKIEIQLGETSYALGQGDCLAMQLDQPVIYSNHSAQVAR
CEEEECCCHHHHHHHHHEEEECEEEEEECCCEEECCCCCEEEEEECCCEEECCCHHHHHH
YILVVSNQLVPALKESL
HHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA