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The map label for this gene is yafC [H]

Identifier: 213156937

GI number: 213156937

Start: 1699739

End: 1700548

Strand: Direct

Name: yafC [H]

Synonym: AB57_1608

Alternate gene names: 213156937

Gene position: 1699739-1700548 (Clockwise)

Preceding gene: 213156934

Following gene: 213156939

Centisome position: 41.96

GC content: 38.89

Gene sequence:

>810_bases
ATGACGCCGTCCGCCGTAAGCAAGTTAATTTCTCGTTTAGAAAAAAGACTGGGTGTCAGGTTACTCAATCGTTCAACACG
TCAGTTTCAGCTTACCAGTGAAGGATGCCAGTTTTATGAGCAAGGCATTCAAATACTCAATGACTTGGACGAACTGGAAC
AATCGGTTACCGCAAATCATATACCGAAAGGGCGAATTAGAATCCATACCAGTTTTTCATATTGGACACACTTTTTATTG
CCTTGTATTAGTTTGTTTAATCAACGTTACCCGGAAATTGAATTAGAAGCTCATTTGAGTGATGAAGTAATTAATTTGGT
TGAACAAAGAATTGATGTTGCGATTCGAACAGGACCTTTGAAAAGTTCCAATTTGGTGGCCCGATCGCTTGGCAGTACTT
ATAAACACTCTGTTTGCTCACCTGTATATATTGAAAAGTACGGTTGCCCCGAACATCCAGATGAACTACATGAACATCAG
CTTTTAGATGTAAGTTATCAGCGCCAGAACAAAACCTGGTTATTTAAAAAAGCAACTCAGGAAATCAGCCTAACCCCCTC
TAAAGTTTTAAAAGTAAACCATGGCGAAGCAATTTTACAGTTGGCACTGGCAGGTGCCGGTATTGCTCAACTAAATGAAT
TCCAGATTCGAAATGCTTTACAGCAAAAACAACTCGTCAAAATTCTTGAAGATTGGAATATTCATGCTTCTGAAGAATTT
CATGCTGTCTGGATTGGTCATGATAAGTATGTTCCTAATCGCGTACGTACATTCTTGGATTTTTTGGTAGAGCATGCCTC
TATAAATTAG

Upstream 100 bases:

>100_bases
TGCTATGTCTTATTTTGATATCAATCGTTCTGGCGAGTTGGCAATTTTTATACGGGTGGTCGAGCTTGGAAGTTTTTCAG
CGGTAGCAAGAGCATGTAAC

Downstream 100 bases:

>100_bases
TTTAGTGTTTGCTCGCACTCAATTGGCAATGCTGCATTGTTTGATTCATGGTTTCTACAAAGTTCATTTTTGCATCAATA
TTTTGCAAACTTAATTTTGG

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNDLDELEQSVTANHIPKGRIRIHTSFSYWTHFLL
PCISLFNQRYPEIELEAHLSDEVINLVEQRIDVAIRTGPLKSSNLVARSLGSTYKHSVCSPVYIEKYGCPEHPDELHEHQ
LLDVSYQRQNKTWLFKKATQEISLTPSKVLKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEF
HAVWIGHDKYVPNRVRTFLDFLVEHASIN

Sequences:

>Translated_269_residues
MTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNDLDELEQSVTANHIPKGRIRIHTSFSYWTHFLL
PCISLFNQRYPEIELEAHLSDEVINLVEQRIDVAIRTGPLKSSNLVARSLGSTYKHSVCSPVYIEKYGCPEHPDELHEHQ
LLDVSYQRQNKTWLFKKATQEISLTPSKVLKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEF
HAVWIGHDKYVPNRVRTFLDFLVEHASIN
>Mature_268_residues
TPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNDLDELEQSVTANHIPKGRIRIHTSFSYWTHFLLP
CISLFNQRYPEIELEAHLSDEVINLVEQRIDVAIRTGPLKSSNLVARSLGSTYKHSVCSPVYIEKYGCPEHPDELHEHQL
LDVSYQRQNKTWLFKKATQEISLTPSKVLKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEFH
AVWIGHDKYVPNRVRTFLDFLVEHASIN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=263, Percent_Identity=37.6425855513308, Blast_Score=183, Evalue=8e-48,
Organism=Escherichia coli, GI1787128, Length=276, Percent_Identity=30.0724637681159, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI145693193, Length=235, Percent_Identity=31.4893617021277, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI87081978, Length=234, Percent_Identity=29.4871794871795, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789440, Length=267, Percent_Identity=31.0861423220974, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789639, Length=266, Percent_Identity=27.4436090225564, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787589, Length=258, Percent_Identity=26.7441860465116, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789173, Length=231, Percent_Identity=27.7056277056277, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788706, Length=249, Percent_Identity=25.3012048192771, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786448, Length=255, Percent_Identity=27.0588235294118, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30931; Mature: 30800

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNDLDELEQSVTANH
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEAHLSDEVINLVEQRIDVAIRTGPL
CCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHEECCCC
KSSNLVARSLGSTYKHSVCSPVYIEKYGCPEHPDELHEHQLLDVSYQRQNKTWLFKKATQ
CCCHHHHHHHCCHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHH
EISLTPSKVLKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEF
HHCCCHHHHEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
HAVWIGHDKYVPNRVRTFLDFLVEHASIN
EEEEEECCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNDLDELEQSVTANH
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEAHLSDEVINLVEQRIDVAIRTGPL
CCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHEECCCC
KSSNLVARSLGSTYKHSVCSPVYIEKYGCPEHPDELHEHQLLDVSYQRQNKTWLFKKATQ
CCCHHHHHHHCCHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHH
EISLTPSKVLKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEF
HHCCCHHHHEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
HAVWIGHDKYVPNRVRTFLDFLVEHASIN
EEEEEECCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]