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The map label for this gene is phnR [H]

Identifier: 213156896

GI number: 213156896

Start: 1649575

End: 1650297

Strand: Direct

Name: phnR [H]

Synonym: AB57_1567

Alternate gene names: 213156896

Gene position: 1649575-1650297 (Clockwise)

Preceding gene: 213156895

Following gene: 213156897

Centisome position: 40.73

GC content: 41.91

Gene sequence:

>723_bases
ATGGAACAGGACCAAGCACGCATACCTAAATATATTCCTATCCGCGATGCAATTGCCCATGATATTGAATCTGGCGTATT
AGAAGCCCACGCAAAACTTCCATCAGAAAGAGTGCTTTCTGAACAATTTCAAACCACTCGTGTGGCTGCACGTGAAGCTT
TGCTGGCTCTGGAAACTGATGGCTTGATTTATCGACTAGATCGCCGTGGTTGGTATGTTCGTTCTCCTCGTATTATTTAT
CACCCACAATCGACTAAAAACTTTAATCAGTTCGTGATTGAACAAGGCTATGAACCTTCTACAGAAGTGATTTCGAGTGA
ACTGACTCAGGCCACTTCTTGGGATGCCAAGCATTTAAAAGTTGAAAAAGGGCATCCGATTTATTCAGTTTGGCGACGTC
GTTGTATTAATGGTCGACCTGTTTTGGTTGAACATTTACGTGTGAATGCCGAGCTTTTTCCCGAGTTTTTAACTCATGAT
CTCAAGCAATCGATTACTTTGCTGATGGCAAATCAATATAACTGCCATATCACCAGAGCCGATATTAATCTGTATCCAAC
AGCTTTATCGGAACAGCAGGCCAAAGCACTACATGTGAATGTTGGCGCGCTCGGTTTATATATTTGCCGTAGCAACAGAA
ATGAAGAAGGTGTGATTACCGATGTTGACCAAGAATATTGGCTACATGATGTTTTAGATTTACATTTCGAAGCGCGAGCA
TAA

Upstream 100 bases:

>100_bases
AGAGATTGTTTTGCTTAAAATATCAGCATTAATAAAAGCTTTTGTCATATTTTTTCAGTATATTGCTATTAATCTCTTTA
TTTATAAATTCTAAGTTTGT

Downstream 100 bases:

>100_bases
AATACAATCTGGTTTAAACCAGATTAATTAAACTGTCATATAAAGCTGTTGAAATACGATCATCAAATAATTGCATTCGA
TGGTTTGCAGATGAAACAGT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MEQDQARIPKYIPIRDAIAHDIESGVLEAHAKLPSERVLSEQFQTTRVAAREALLALETDGLIYRLDRRGWYVRSPRIIY
HPQSTKNFNQFVIEQGYEPSTEVISSELTQATSWDAKHLKVEKGHPIYSVWRRRCINGRPVLVEHLRVNAELFPEFLTHD
LKQSITLLMANQYNCHITRADINLYPTALSEQQAKALHVNVGALGLYICRSNRNEEGVITDVDQEYWLHDVLDLHFEARA

Sequences:

>Translated_240_residues
MEQDQARIPKYIPIRDAIAHDIESGVLEAHAKLPSERVLSEQFQTTRVAAREALLALETDGLIYRLDRRGWYVRSPRIIY
HPQSTKNFNQFVIEQGYEPSTEVISSELTQATSWDAKHLKVEKGHPIYSVWRRRCINGRPVLVEHLRVNAELFPEFLTHD
LKQSITLLMANQYNCHITRADINLYPTALSEQQAKALHVNVGALGLYICRSNRNEEGVITDVDQEYWLHDVLDLHFEARA
>Mature_240_residues
MEQDQARIPKYIPIRDAIAHDIESGVLEAHAKLPSERVLSEQFQTTRVAAREALLALETDGLIYRLDRRGWYVRSPRIIY
HPQSTKNFNQFVIEQGYEPSTEVISSELTQATSWDAKHLKVEKGHPIYSVWRRRCINGRPVLVEHLRVNAELFPEFLTHD
LKQSITLLMANQYNCHITRADINLYPTALSEQQAKALHVNVGALGLYICRSNRNEEGVITDVDQEYWLHDVLDLHFEARA

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=214, Percent_Identity=28.0373831775701, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1788418, Length=154, Percent_Identity=29.8701298701299, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082252, Length=193, Percent_Identity=22.279792746114, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27712; Mature: 27712

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQDQARIPKYIPIRDAIAHDIESGVLEAHAKLPSERVLSEQFQTTRVAAREALLALETD
CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECC
GLIYRLDRRGWYVRSPRIIYHPQSTKNFNQFVIEQGYEPSTEVISSELTQATSWDAKHLK
CEEEEEECCCEEEECCEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEE
VEKGHPIYSVWRRRCINGRPVLVEHLRVNAELFPEFLTHDLKQSITLLMANQYNCHITRA
EECCCCHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHEEEECCCEEEEEEE
DINLYPTALSEQQAKALHVNVGALGLYICRSNRNEEGVITDVDQEYWLHDVLDLHFEARA
CCEEECCCCCCCCCCEEEEEECEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEQDQARIPKYIPIRDAIAHDIESGVLEAHAKLPSERVLSEQFQTTRVAAREALLALETD
CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECC
GLIYRLDRRGWYVRSPRIIYHPQSTKNFNQFVIEQGYEPSTEVISSELTQATSWDAKHLK
CEEEEEECCCEEEECCEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEE
VEKGHPIYSVWRRRCINGRPVLVEHLRVNAELFPEFLTHDLKQSITLLMANQYNCHITRA
EECCCCHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHEEEECCCEEEEEEE
DINLYPTALSEQQAKALHVNVGALGLYICRSNRNEEGVITDVDQEYWLHDVLDLHFEARA
CCEEECCCCCCCCCCEEEEEECEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA