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The map label for this gene is cdaR [H]

Identifier: 21245071

GI number: 21245071

Start: 5153769

End: 5154980

Strand: Reverse

Name: cdaR [H]

Synonym: XAC4359

Alternate gene names: 21245071

Gene position: 5154980-5153769 (Counterclockwise)

Preceding gene: 21245072

Following gene: 21245070

Centisome position: 99.6

GC content: 69.8

Gene sequence:

>1212_bases
ATGCTCACGCTCGACCGCACCCTGGCGCAGTCCATCGTCGACCGCGCGATGACCATCATCGACGGCAACGTCAATGTGAT
GGACCACTCCGGCGTCATCATCGCCAGCGGCGAGCCGGCGCGGATCGGCCAGCTGCACGAAGGTGCATTGCTGGTGCTGT
CCCGGCAGGGCCGGGTGGAGATCGACGCTGCGCTGGCGCAGCAGCTGGATGCGGTGCGCCCGGGCGTCAACCTGCCGCTG
ATCGCCGAGGGCCGCATCGTCGGCTGCGTCGGGCTGACCGGCGACCCGCAGCGGATCGGGCAACAGGCCGAACTGGTGCG
CATGGCCGCCGAGGCGATGCTGGAACAGGCCGGGTTGCTGCGCCTGCTGGCCCGCGACGCGCGCCTGCGCGAAGAAGTCA
CGCTGGGCCTGATCCGTCCCGACGGCCCGACCCCGGCGCTGGCCGGCTGGGCCGAGCGGCTCGGTATCGCGCTGGAGCTG
CCGCGCGTGGCCGCGGTGATCGAAGTGGAAAGCGACAGCCTGGACCTGGACGCGATGCTGGTGGAACTGCAGCGCCTGCA
CACCCTGCTGTCCACGCCCGAGCGCGGCAACCTGATCGCCGCCACTGCGCTCAACGAGCTGGTGGTGCTCAAGCCGGCAT
TGGACCGCCGTGGCCACTGGGACGTGGAGGAGCAACGCCGTCGCGCGCACAGCCTGCTCGAGCGCATGCGCGCCAGCAGC
CGGCTACGGATCCGGCTGGCCCTGGGCCAGTATTTTCCGCAGTCCAATGGCCTGGCGTTGTCGCACCAGATCGCGCGCAC
CACCATGCGCATCGGCAAGGCGCGCACCCCGCACGCCGACGCATTCTTCTACGACGATTACCGCCTGCCGGTGCTGGTCG
ACGACCTGCGCCAGGCCTGGCAGGCCGAGGAATTGCGCAAGCCGCTGCAGGCACTGCTGGCGCAGGACCGTCGCAGTCAG
TTGCTGAAGACCTTGTCGGTCTGGTTCGGCGCCGGCATGCGCATGGCCCCCACCGCCAAGGCGCTGGGCATTCATCGCAA
CACCCTGGATTACCGCATGCAGCGCATCCAGGAACTGTGCGCGGTGGACCTGGGCAACACCGACGACTGCATGCGCCTGT
ACCTGGCGCTGCAGATGCGCGACGACAGCGCCGCAACCGTGGCGAACACCGACGCGCACGCCCCCGACCGAGCGACGCCA
CACCCGCCGTAA

Upstream 100 bases:

>100_bases
GGGCATCGGCCGCAACTCCTCCCGTCACACACCTGCCGAACACGCGCGCAGCGAACATGCCACCGTGACCGCCCCTGATC
GCGGCAACAGACCCCTGCCC

Downstream 100 bases:

>100_bases
CGCTGCGCTGTGCGGTGGCGCACGCAACGCCGCCTTGGCGGGTATGCGCAGTCCGCTAGACTGCGCGGATTGCCCGGCTG
CGAGCGCTCCGTTGAACCAG

Product: sugar diacide regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVEIDAALAQQLDAVRPGVNLPL
IAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLLRLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALEL
PRVAAVIEVESDSLDLDAMLVELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVEEQRRRAHSLLERMRASS
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPHADAFFYDDYRLPVLVDDLRQAWQAEELRKPLQALLAQDRRSQ
LLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELCAVDLGNTDDCMRLYLALQMRDDSAATVANTDAHAPDRATP
HPP

Sequences:

>Translated_403_residues
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVEIDAALAQQLDAVRPGVNLPL
IAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLLRLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALEL
PRVAAVIEVESDSLDLDAMLVELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVEEQRRRAHSLLERMRASS
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPHADAFFYDDYRLPVLVDDLRQAWQAEELRKPLQALLAQDRRSQ
LLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELCAVDLGNTDDCMRLYLALQMRDDSAATVANTDAHAPDRATP
HPP
>Mature_403_residues
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVEIDAALAQQLDAVRPGVNLPL
IAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLLRLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALEL
PRVAAVIEVESDSLDLDAMLVELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVEEQRRRAHSLLERMRASS
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPHADAFFYDDYRLPVLVDDLRQAWQAEELRKPLQALLAQDRRSQ
LLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELCAVDLGNTDDCMRLYLALQMRDDSAATVANTDAHAPDRATP
HPP

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=379, Percent_Identity=51.9788918205805, Blast_Score=385, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 44504; Mature: 44504

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVE
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCCCCEEEEEECCCCEE
IDAALAQQLDAVRPGVNLPLIAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLL
HHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALELPRVAAVIEVESDSLDLDAML
HHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCEEEECCCEEEEEEECCCCCCHHHHH
VELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVEEQRRRAHSLLERMRASS
HHHHHHHHHHCCCCCCCEEEEEHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPHADAFFYDDYRLPVLVDDLRQAW
CEEEEEEEHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH
QAEELRKPLQALLAQDRRSQLLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH
AVDLGNTDDCMRLYLALQMRDDSAATVANTDAHAPDRATPHPP
HCCCCCCHHHHHHHHHHEECCCCCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MLTLDRTLAQSIVDRAMTIIDGNVNVMDHSGVIIASGEPARIGQLHEGALLVLSRQGRVE
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCCCCEEEEEECCCCEE
IDAALAQQLDAVRPGVNLPLIAEGRIVGCVGLTGDPQRIGQQAELVRMAAEAMLEQAGLL
HHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLLARDARLREEVTLGLIRPDGPTPALAGWAERLGIALELPRVAAVIEVESDSLDLDAML
HHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCEEEECCCEEEEEEECCCCCCHHHHH
VELQRLHTLLSTPERGNLIAATALNELVVLKPALDRRGHWDVEEQRRRAHSLLERMRASS
HHHHHHHHHHCCCCCCCEEEEEHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
RLRIRLALGQYFPQSNGLALSHQIARTTMRIGKARTPHADAFFYDDYRLPVLVDDLRQAW
CEEEEEEEHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH
QAEELRKPLQALLAQDRRSQLLKTLSVWFGAGMRMAPTAKALGIHRNTLDYRMQRIQELC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH
AVDLGNTDDCMRLYLALQMRDDSAATVANTDAHAPDRATPHPP
HCCCCCCHHHHHHHHHHEECCCCCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]