| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is dinG [H]
Identifier: 21244748
GI number: 21244748
Start: 4721104
End: 4723239
Strand: Reverse
Name: dinG [H]
Synonym: XAC4031
Alternate gene names: 21244748
Gene position: 4723239-4721104 (Counterclockwise)
Preceding gene: 21244749
Following gene: 21244747
Centisome position: 91.26
GC content: 65.87
Gene sequence:
>2136_bases ATGAGTGAAGTCGCCCCTCCGGCCGCGCCGTCGGCGCCCGTTCCCACCCAGCGCAGCCTGACCGACCCGATCAAGGCCAG CATCCGCGACGCCTACGCCAAGCTGCAGGCCAATACGCCGGGCTTCGCCACGCGGCGCGCACAGAGCCAGATGATCGGCC TGGTCTCGCGTGCACTGGCCACCTCTGGCGGCATCGGCATCGCCGAGGCGCCCACCGGCGTGGGCAAGAGCCTGGGCTAT CTCACCGCCGGCGTGCCGATCGCGTTGGCCACCAAGAAAAAACTGGTCATCAGCACCGGCACCGTTGCGCTGCAATCGCA GCTGGTGGAACGCGACATCCCGGCCTTCCTCAAGGCCACCGGGCTGGATGCCACCGTGGCGTTGGCCAAGGGCCGCACGC GCTACCTGTGCACCCGCAATGCCGCCGAGCTGGAAGGCGACACCAGTCAGAACGCCATGTTCGAAGACGAGCAGGCGCTC TACGACCGCCCGCTCAGCCCGGTCGATGCGGATCTGGCCAAACGGTTGGCCAAGGCCTACGCCGCCCGCACCTGGAATGG CGATCTGGACGATGCGCCAGAACAGATCTCCGTGCCGCTGCGCATGCGCATCACCACGCCGGCGTCCGGCTGTGCGGGGC GCCGCTGCAGCTACGCAGCGCAATGTCCGGTGCTCAGGGCACGCACCGATGTGCGCGAAGCGCAGATCGTGGTCACCAAC CATGCCTTGCTGTTGTCGTCGCTGTCGCTGGGCGATGCCGAAAACGGCCAGCCACTCATCGCCCCGCCAGCGGACATGCT GCTGGTGCTCGACGAAGGCCACCACATCGCCGGCGTAGCGATCGATCAGGGCGCAGCCAACCTGCCGCTGGACGACATGG CCAGGCGCACCGGGCGCATGCAGATCCTCATCGCGGCCGCTTATCGCGCAGTGGACAAGGACAAGCTGGGCAACTTGCTG CCCAACGAAGCCATCGAGGTGGCTGCGCGCGTGTCCAAACTGCTCAAGGCCTTCCACGCCGAGGTCGAACGCGTGTGGAA GCCGGAGCCCGGCGAGCGCGATCCGCTGTGGCGCGCGGCCAATGGCAAGTTGCCGCCGCAATGGGGCCCTGCCATCGAAG AGCTCGGCGAAGAAACCCGCGCGCTGTTCAACTGGGTGCATGCCGCACACAGCGCCATTGCCAAGGGAAAACAGGACGAT TCCGCGCGCGAACGGCTGCAGCGCAGCCTCGGCCTGGCGCTGGAAATGGCCGAGCAACAACACAATCTGTGGAGCGGGTG GCGCCGCGAGGACAAGGAAGGTCAGCCGCCGATGGCGCGCTGGATCACCCTCTCGCGCGATGGCGACCTGATCTGCCATT GCTCGCCGGTGTCGGCCGCGCAGGTGCTGCGCACGATGATCTGGAACGAGGTGGATTCGGTGGTGATGACCTCGGCCACG CTGACCGGTGGCGGCGATTTCCAATCCTTCGCCATCGACAACGGCTTGCCCGATCACGCCGAAATGGCATCGCTGGCCTC GCCGTTCGACCTACCCAACCAGGCCGAATTGATCGTCCCCAATTTTCCGGTGACTCCCGATGACCGTGAAGGCCATCCCA AGGAAGTGGCCAAGTATCTCGTACGCGAACTGGATTGGAACGCCAAGGGCAGCATCGTGCTGTTCACTTCGCGCTGGAAG ATGGAAAAGGTGGCCGACCTGATGCCGCTGGCGCAGCGCAACCGCGTGCTGGTGCAGGGCGAGGGCAACAAGTCGCAACT GATCACCGAACATCTGCGCCGCATCGGCGCTGGCGAAGGCTCGGTGTTGTTCGGCCTCAATTCCTTCGGCGAAGGATTGG ACCTGCCCGGCGAAGCCTGCACCACCGTGGTCATCACCCAGGTGCCGTTCGCCGTGCCCACCGATCCGCAAACCTCCACC TTGAGCGAATGGCTGGAAAGCCGCGGCCATAACGCCTTCAACCTGATCGCCATCCCGCATGCGTTGCGCACGCTCACCCA ATTCGCCGGCCGCCTGATCCGCAGCTCCAGCGACCACGGCCGCGTGATCATTCTCGACTCGCGCCTGCTCACCCGTCGCT ACGGCAAACGCATCATCGATGCCTTGCCGCCGTTCAAGCGGGTGATCGGGCGTTGA
Upstream 100 bases:
>100_bases GGCACGGGACTCGCCGGGTCGCCGCTGCAAGCAGGCAACCTGTTCAGCCGTGCGGCGCGCCGGTCGCAGTCGCTGCGCCG GTCCGTGCGAAAATAGCGCG
Downstream 100 bases:
>100_bases AGATCGCCTGGCGATGCCGATACGGATGTAGCGCGCCGTTTTGGGTGTTGCACGATGCAAGCCGGTGCCGCGTTGTGCAG CTAAACGGGGAGATGGCCAG
Product: ATP-dependent DNA helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 711; Mature: 710
Protein sequence:
>711_residues MSEVAPPAAPSAPVPTQRSLTDPIKASIRDAYAKLQANTPGFATRRAQSQMIGLVSRALATSGGIGIAEAPTGVGKSLGY LTAGVPIALATKKKLVISTGTVALQSQLVERDIPAFLKATGLDATVALAKGRTRYLCTRNAAELEGDTSQNAMFEDEQAL YDRPLSPVDADLAKRLAKAYAARTWNGDLDDAPEQISVPLRMRITTPASGCAGRRCSYAAQCPVLRARTDVREAQIVVTN HALLLSSLSLGDAENGQPLIAPPADMLLVLDEGHHIAGVAIDQGAANLPLDDMARRTGRMQILIAAAYRAVDKDKLGNLL PNEAIEVAARVSKLLKAFHAEVERVWKPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHAAHSAIAKGKQDD SARERLQRSLGLALEMAEQQHNLWSGWRREDKEGQPPMARWITLSRDGDLICHCSPVSAAQVLRTMIWNEVDSVVMTSAT LTGGGDFQSFAIDNGLPDHAEMASLASPFDLPNQAELIVPNFPVTPDDREGHPKEVAKYLVRELDWNAKGSIVLFTSRWK MEKVADLMPLAQRNRVLVQGEGNKSQLITEHLRRIGAGEGSVLFGLNSFGEGLDLPGEACTTVVITQVPFAVPTDPQTST LSEWLESRGHNAFNLIAIPHALRTLTQFAGRLIRSSSDHGRVIILDSRLLTRRYGKRIIDALPPFKRVIGR
Sequences:
>Translated_711_residues MSEVAPPAAPSAPVPTQRSLTDPIKASIRDAYAKLQANTPGFATRRAQSQMIGLVSRALATSGGIGIAEAPTGVGKSLGY LTAGVPIALATKKKLVISTGTVALQSQLVERDIPAFLKATGLDATVALAKGRTRYLCTRNAAELEGDTSQNAMFEDEQAL YDRPLSPVDADLAKRLAKAYAARTWNGDLDDAPEQISVPLRMRITTPASGCAGRRCSYAAQCPVLRARTDVREAQIVVTN HALLLSSLSLGDAENGQPLIAPPADMLLVLDEGHHIAGVAIDQGAANLPLDDMARRTGRMQILIAAAYRAVDKDKLGNLL PNEAIEVAARVSKLLKAFHAEVERVWKPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHAAHSAIAKGKQDD SARERLQRSLGLALEMAEQQHNLWSGWRREDKEGQPPMARWITLSRDGDLICHCSPVSAAQVLRTMIWNEVDSVVMTSAT LTGGGDFQSFAIDNGLPDHAEMASLASPFDLPNQAELIVPNFPVTPDDREGHPKEVAKYLVRELDWNAKGSIVLFTSRWK MEKVADLMPLAQRNRVLVQGEGNKSQLITEHLRRIGAGEGSVLFGLNSFGEGLDLPGEACTTVVITQVPFAVPTDPQTST LSEWLESRGHNAFNLIAIPHALRTLTQFAGRLIRSSSDHGRVIILDSRLLTRRYGKRIIDALPPFKRVIGR >Mature_710_residues SEVAPPAAPSAPVPTQRSLTDPIKASIRDAYAKLQANTPGFATRRAQSQMIGLVSRALATSGGIGIAEAPTGVGKSLGYL TAGVPIALATKKKLVISTGTVALQSQLVERDIPAFLKATGLDATVALAKGRTRYLCTRNAAELEGDTSQNAMFEDEQALY DRPLSPVDADLAKRLAKAYAARTWNGDLDDAPEQISVPLRMRITTPASGCAGRRCSYAAQCPVLRARTDVREAQIVVTNH ALLLSSLSLGDAENGQPLIAPPADMLLVLDEGHHIAGVAIDQGAANLPLDDMARRTGRMQILIAAAYRAVDKDKLGNLLP NEAIEVAARVSKLLKAFHAEVERVWKPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHAAHSAIAKGKQDDS ARERLQRSLGLALEMAEQQHNLWSGWRREDKEGQPPMARWITLSRDGDLICHCSPVSAAQVLRTMIWNEVDSVVMTSATL TGGGDFQSFAIDNGLPDHAEMASLASPFDLPNQAELIVPNFPVTPDDREGHPKEVAKYLVRELDWNAKGSIVLFTSRWKM EKVADLMPLAQRNRVLVQGEGNKSQLITEHLRRIGAGEGSVLFGLNSFGEGLDLPGEACTTVVITQVPFAVPTDPQTSTL SEWLESRGHNAFNLIAIPHALRTLTQFAGRLIRSSSDHGRVIILDSRLLTRRYGKRIIDALPPFKRVIGR
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=717, Percent_Identity=32.7754532775453, Blast_Score=316, Evalue=4e-87, Organism=Escherichia coli, GI1788110, Length=682, Percent_Identity=29.9120234604106, Blast_Score=220, Evalue=3e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 77144; Mature: 77013
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEVAPPAAPSAPVPTQRSLTDPIKASIRDAYAKLQANTPGFATRRAQSQMIGLVSRALA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH TSGGIGIAEAPTGVGKSLGYLTAGVPIALATKKKLVISTGTVALQSQLVERDIPAFLKAT HCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHC GLDATVALAKGRTRYLCTRNAAELEGDTSQNAMFEDEQALYDRPLSPVDADLAKRLAKAY CCCCEEEECCCCEEEEEECCHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH AARTWNGDLDDAPEQISVPLRMRITTPASGCAGRRCSYAAQCPVLRARTDVREAQIVVTN HHCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCCCCCCHHCCCCHHHHCCCCCEEEEEEC HALLLSSLSLGDAENGQPLIAPPADMLLVLDEGHHIAGVAIDQGAANLPLDDMARRTGRM HHHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCEEEEEEEECCCCCCCHHHHHHHCCCE QILIAAAYRAVDKDKLGNLLPNEAIEVAARVSKLLKAFHAEVERVWKPEPGERDPLWRAA EEEEEHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECC NGKLPPQWGPAIEELGEETRALFNWVHAAHSAIAKGKQDDSARERLQRSLGLALEMAEQQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH HNLWSGWRREDKEGQPPMARWITLSRDGDLICHCSPVSAAQVLRTMIWNEVDSVVMTSAT HHHHHHHCCCCCCCCCCHHHEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEE LTGGGDFQSFAIDNGLPDHAEMASLASPFDLPNQAELIVPNFPVTPDDREGHPKEVAKYL ECCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHH VRELDWNAKGSIVLFTSRWKMEKVADLMPLAQRNRVLVQGEGNKSQLITEHLRRIGAGEG HHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCC SVLFGLNSFGEGLDLPGEACTTVVITQVPFAVPTDPQTSTLSEWLESRGHNAFNLIAIPH CEEEECCCCCCCCCCCCHHHHEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEHHH ALRTLTQFAGRLIRSSSDHGRVIILDSRLLTRRYGKRIIDALPPFKRVIGR HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHCC >Mature Secondary Structure SEVAPPAAPSAPVPTQRSLTDPIKASIRDAYAKLQANTPGFATRRAQSQMIGLVSRALA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH TSGGIGIAEAPTGVGKSLGYLTAGVPIALATKKKLVISTGTVALQSQLVERDIPAFLKAT HCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHC GLDATVALAKGRTRYLCTRNAAELEGDTSQNAMFEDEQALYDRPLSPVDADLAKRLAKAY CCCCEEEECCCCEEEEEECCHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH AARTWNGDLDDAPEQISVPLRMRITTPASGCAGRRCSYAAQCPVLRARTDVREAQIVVTN HHCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCCCCCCHHCCCCHHHHCCCCCEEEEEEC HALLLSSLSLGDAENGQPLIAPPADMLLVLDEGHHIAGVAIDQGAANLPLDDMARRTGRM HHHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCEEEEEEEECCCCCCCHHHHHHHCCCE QILIAAAYRAVDKDKLGNLLPNEAIEVAARVSKLLKAFHAEVERVWKPEPGERDPLWRAA EEEEEHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECC NGKLPPQWGPAIEELGEETRALFNWVHAAHSAIAKGKQDDSARERLQRSLGLALEMAEQQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH HNLWSGWRREDKEGQPPMARWITLSRDGDLICHCSPVSAAQVLRTMIWNEVDSVVMTSAT HHHHHHHCCCCCCCCCCHHHEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEE LTGGGDFQSFAIDNGLPDHAEMASLASPFDLPNQAELIVPNFPVTPDDREGHPKEVAKYL ECCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHH VRELDWNAKGSIVLFTSRWKMEKVADLMPLAQRNRVLVQGEGNKSQLITEHLRRIGAGEG HHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCC SVLFGLNSFGEGLDLPGEACTTVVITQVPFAVPTDPQTSTLSEWLESRGHNAFNLIAIPH CEEEECCCCCCCCCCCCHHHHEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEHHH ALRTLTQFAGRLIRSSSDHGRVIILDSRLLTRRYGKRIIDALPPFKRVIGR HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396546; 8385320 [H]