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The map label for this gene is rimN

Identifier: 21244532

GI number: 21244532

Start: 4480281

End: 4480844

Strand: Direct

Name: rimN

Synonym: XAC3808

Alternate gene names: 21244532

Gene position: 4480281-4480844 (Clockwise)

Preceding gene: 21244531

Following gene: 21244533

Centisome position: 86.57

GC content: 73.23

Gene sequence:

>564_bases
ATGACCGACACACTCGACCTGGATCGCGCCGTCGCCGCACTGACGCAGGGCGGCGTGATCGCCTACCCGACCGAAGCGGT
GTGGGGACTGGGATGCGACCCGCGCCAGCGAGCGGCCGTGATGCGGCTGCTGGAGATCAAGCGGCGCCCGGTGGAGAAGG
GCGTGATCGTAGTGGCGTCGAGCGTGGACGTACTGCGCGACTGGGTCGACATCGACGCACTGGAGCCGGCACGCCGGCGG
GACGTGCTGACCAGCTGGCCCGGCCCGCACACCTGGATCCTGCCGATCACCGACCGGGCGCCACGCTGGGTCACCGGCGA
GCATGACGGGCTGGCGGTACGCATCAGCGCGCATCCCGTGGTGGCGGCCCTGTGCGGGGCCTGGGGGGCGCCGCTGGTGT
CGACCAGCGCCAACCTGGCCGGCGAGCCGCCAGCGCGCAGCCGCGCCGCCCTGGATCCGGCGTTGCTGGCGACGATCGAC
GGCGTGGTGGATGGCGAGACCGGCGCCCTGGCGCAGCCGACCCAGATCCGCGACGCACGCAGCGGGCAGATCCTGCGCGA
CTGA

Upstream 100 bases:

>100_bases
GCTGTCAAGAAGGCGCCAGCCAAGAAGACGGCCACCAAGAAGGCCGCCAAGCGCGTGGTCAAGAAAACCGTGAGCAAGGC
CGCGGGCTGAGAGGCGCAGC

Downstream 100 bases:

>100_bases
GTGCGGCCGACAAACGACCGCGCAGTCATCAGGCGAGCGCGGCCGGTCCATCGGTTCGTCTGTCCCATGCCGACTGTTCC
GGGCGGTCGCCCTTGTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTDTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIKRRPVEKGVIVVASSVDVLRDWVDIDALEPARRR
DVLTSWPGPHTWILPITDRAPRWVTGEHDGLAVRISAHPVVAALCGAWGAPLVSTSANLAGEPPARSRAALDPALLATID
GVVDGETGALAQPTQIRDARSGQILRD

Sequences:

>Translated_187_residues
MTDTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIKRRPVEKGVIVVASSVDVLRDWVDIDALEPARRR
DVLTSWPGPHTWILPITDRAPRWVTGEHDGLAVRISAHPVVAALCGAWGAPLVSTSANLAGEPPARSRAALDPALLATID
GVVDGETGALAQPTQIRDARSGQILRD
>Mature_186_residues
TDTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIKRRPVEKGVIVVASSVDVLRDWVDIDALEPARRRD
VLTSWPGPHTWILPITDRAPRWVTGEHDGLAVRISAHPVVAALCGAWGAPLVSTSANLAGEPPARSRAALDPALLATIDG
VVDGETGALAQPTQIRDARSGQILRD

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=193, Percent_Identity=47.6683937823834, Blast_Score=178, Evalue=2e-46,
Organism=Escherichia coli, GI87081864, Length=175, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321269, Length=138, Percent_Identity=30.4347826086957, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI78707274, Length=146, Percent_Identity=32.1917808219178, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_XANAC (Q8PG13)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_644114.1
- HSSP:   P45748
- ProteinModelPortal:   Q8PG13
- SMR:   Q8PG13
- GeneID:   1157879
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC3808
- NMPDR:   fig|190486.1.peg.3758
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- ProtClustDB:   CLSK446122
- BioCyc:   XAXO190486:XAC3808-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 19956; Mature: 19825

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIKRRPVEKGVIVVAS
CCCCHHHHHHHHHHHCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC
SVDVLRDWVDIDALEPARRRDVLTSWPGPHTWILPITDRAPRWVTGEHDGLAVRISAHPV
CHHHHHHHHCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCHH
VAALCGAWGAPLVSTSANLAGEPPARSRAALDPALLATIDGVVDGETGALAQPTQIRDAR
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCEECCCCCCCCCCHHHCCCC
SGQILRD
CCCCCCC
>Mature Secondary Structure 
TDTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIKRRPVEKGVIVVAS
CCCHHHHHHHHHHHCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC
SVDVLRDWVDIDALEPARRRDVLTSWPGPHTWILPITDRAPRWVTGEHDGLAVRISAHPV
CHHHHHHHHCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCHH
VAALCGAWGAPLVSTSANLAGEPPARSRAALDPALLATIDGVVDGETGALAQPTQIRDAR
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCEECCCCCCCCCCHHHCCCC
SGQILRD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217